nsv4678787
- Organism: Homo sapiens
- Study:nstd190 (Williams et al. 2020)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:378,362
- Publication(s):Williams et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2642 SVs from 107 studies. See in: genome view
Overlapping variant regions from other studies: 711 SVs from 65 studies. See in: genome view
Overlapping variant regions from other studies: 3021 SVs from 114 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4678787 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 22,732,985 | 23,111,346 |
| nsv4678787 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NT_187603.1 | Chr15|NT_1 87603.1 | 1 | 211,825 |
| nsv4678787 | Submitted genomic | GRCh37.p13 | Primary Assembly | NC_000015.9 | Chr15 | 22,761,722 | 23,140,114 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16211707 | deletion | SNP array | SNP genotyping analysis |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16211707 | Remapped | Pass | NT_187603.1:g.(?_1 )_(211825_?)del | GRCh38.p12 | Second Pass | NT_187603.1 | Chr15|NT_1 87603.1 | 1 | 211,825 |
| nssv16211707 | Remapped | Good | NC_000015.10:g.(?_ 22732985)_(2311134 6_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,732,985 | 23,111,346 |
| nssv16211707 | Submitted genomic | NC_000015.9:g.(?_2 2761722)_(23140114 _?)del | GRCh37.p13 | NC_000015.9 | Chr15 | 22,761,722 | 23,140,114 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16211707 | 1.02704201628889e-06 | 1 | 973670 |