nsv467338
- Organism: Homo sapiens
- Study:nstd27 (Itsara et al. 2009)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:256,844
- Publication(s):Itsara et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2042 SVs from 81 studies. See in: genome view
Overlapping variant regions from other studies: 2042 SVs from 81 studies. See in: genome view
Overlapping variant regions from other studies: 59 SVs from 8 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv467338 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 66,569,424 | 66,826,267 |
| nsv467338 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 68,329,182 | 68,586,025 |
| nsv467338 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000010.8 | Chr10 | 67,999,188 | 68,256,031 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| nssv644045 | copy number loss | SNP array | SNP genotyping analysis | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv644045 | Remapped | Perfect | NC_000010.11:g.(?_ 66569424)_(6682626 7_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 66,569,424 | 66,826,267 |
| nssv644045 | Remapped | Perfect | NC_000010.10:g.(?_ 68329182)_(6858602 5_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 68,329,182 | 68,586,025 |
| nssv644045 | Submitted genomic | NC_000010.8:g.(?_6 7999188)_(68256031 _?)del | NCBI35 (hg17) | NC_000010.8 | Chr10 | 67,999,188 | 68,256,031 |