nsv466201
- Organism: Homo sapiens
- Study:nstd27 (Itsara et al. 2009)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:260,294
- Publication(s):Itsara et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 3618 SVs from 101 studies. See in: genome view
Overlapping variant regions from other studies: 3622 SVs from 101 studies. See in: genome view
Overlapping variant regions from other studies: 66 SVs from 12 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv466201 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 11,887,764 | 12,148,057 |
| nsv466201 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 11,887,764 | 12,148,057 |
| nsv466201 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000009.9 | Chr9 | 11,877,764 | 12,138,057 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv541811 | copy number loss | HGDP00407 | SNP array | SNP genotyping analysis | 1 | 12 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv541811 | Remapped | Perfect | NC_000009.12:g.(?_ 11887764)_(1214805 7_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,887,764 | 12,148,057 |
| nssv541811 | Remapped | Perfect | NC_000009.11:g.(?_ 11887764)_(1214805 7_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,887,764 | 12,148,057 |
| nssv541811 | Submitted genomic | NC_000009.9:g.(?_1 1877764)_(12138057 _?)del | NCBI35 (hg17) | NC_000009.9 | Chr9 | 11,877,764 | 12,138,057 |