nsv462373
- Organism: Homo sapiens
- Study:nstd27 (Itsara et al. 2009)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:288,433
- Publication(s):Itsara et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 864 SVs from 61 studies. See in: genome view
Overlapping variant regions from other studies: 864 SVs from 61 studies. See in: genome view
Overlapping variant regions from other studies: 45 SVs from 4 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv462373 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 106,171,842 | 106,460,274 |
| nsv462373 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 105,507,543 | 105,795,975 |
| nsv462373 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000005.8 | Chr5 | 105,535,442 | 105,823,874 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv538552 | copy number loss | HGDP00450 | SNP array | SNP genotyping analysis | 1 | 7 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv538552 | Remapped | Perfect | NC_000005.10:g.(?_ 106171842)_(106460 274_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 106,171,842 | 106,460,274 |
| nssv538552 | Remapped | Perfect | NC_000005.9:g.(?_1 05507543)_(1057959 75_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 105,507,543 | 105,795,975 |
| nssv538552 | Submitted genomic | NC_000005.8:g.(?_1 05535442)_(1058238 74_?)del | NCBI35 (hg17) | NC_000005.8 | Chr5 | 105,535,442 | 105,823,874 |