nsv460743
- Organism: Homo sapiens
- Study:nstd27 (Itsara et al. 2009)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:549,369
- Publication(s):Itsara et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1589 SVs from 82 studies. See in: genome view
Overlapping variant regions from other studies: 1589 SVs from 82 studies. See in: genome view
Overlapping variant regions from other studies: 56 SVs from 6 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv460743 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 84,045,667 | 84,595,035 |
| nsv460743 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 84,094,818 | 84,644,186 |
| nsv460743 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000003.9 | Chr3 | 84,177,508 | 84,726,876 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| nssv638109 | copy number loss | SNP array | SNP genotyping analysis | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv638109 | Remapped | Perfect | NC_000003.12:g.(?_ 84045667)_(8459503 5_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 84,045,667 | 84,595,035 |
| nssv638109 | Remapped | Perfect | NC_000003.11:g.(?_ 84094818)_(8464418 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 84,094,818 | 84,644,186 |
| nssv638109 | Submitted genomic | NC_000003.9:g.(?_8 4177508)_(84726876 _?)del | NCBI35 (hg17) | NC_000003.9 | Chr3 | 84,177,508 | 84,726,876 |