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dbVar

Database of genomic structural variation

nsv4435

Organism: Homo sapiens

Study:nstd2 (Kidd et al. 2008)
Variant Type:insertion
Method Type:Sequencing
Submitted on:NCBI35 (hg17)

Variant Calls:2
Validation:Yes
Clinical Assertions: No
Region Size:54,978

Publication(s):Kidd et al. 2008

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 306 SVs from 63 studies. See in: genome view

Remapped(Score: Perfect):97,151,806-97,206,783

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nsv4435	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	97,151,806	97,206,783
nsv4435	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000004.11	Chr4	98,072,957	98,127,934
nsv4435	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000004.9	Chr4	98,430,135	98,485,112

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv7109	insertion	NA12156	Sequencing	Paired-end mapping	3,265
nssv4768	insertion	NA19129	Sequencing	Paired-end mapping	1,384

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nssv7109	Remapped	Perfect	NC_000004.12:g.(97 151806_?)_(?_97184 806)ins6429	GRCh38.p12	First Pass	NC_000004.12	Chr4	97,151,806	97,184,806
nssv4768	Remapped	Perfect	NC_000004.12:g.(97 177567_?)_(?_97206 783)ins5870	GRCh38.p12	First Pass	NC_000004.12	Chr4	97,177,567	97,206,783
nssv7109	Remapped	Perfect	NC_000004.11:g.(98 072957_?)_(?_98105 957)ins6429	GRCh37.p13	First Pass	NC_000004.11	Chr4	98,072,957	98,105,957
nssv4768	Remapped	Perfect	NC_000004.11:g.(98 098718_?)_(?_98127 934)ins5870	GRCh37.p13	First Pass	NC_000004.11	Chr4	98,098,718	98,127,934
nssv7109	Submitted genomic		NC_000004.9:g.(984 30135_?)_(?_984631 35)ins6429	NCBI35 (hg17)		NC_000004.9	Chr4	98,430,135	98,463,135
nssv4768	Submitted genomic		NC_000004.9:g.(984 55896_?)_(?_984851 12)ins5870	NCBI35 (hg17)		NC_000004.9	Chr4	98,455,896	98,485,112

Validation Information

Variant Call ID	Experiment ID	Sample ID	Method	Analysis	Result
nssv4768	3	NA19129	Multiple complete digestion	MCD analysis	Pass

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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