nsv442223
- Organism: Homo sapiens
- Study:nstd22 (McCarroll et al. 2008)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:3
- Validation:Not tested
- Clinical Assertions: No
- Region Size:159,708
- Publication(s):McCarroll et al. 2008
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 719 SVs from 87 studies. See in: genome view
Overlapping variant regions from other studies: 206 SVs from 44 studies. See in: genome view
Overlapping variant regions from other studies: 719 SVs from 87 studies. See in: genome view
Overlapping variant regions from other studies: 98 SVs from 23 studies. See in: genome view
Overlapping variant regions from other studies: 33 SVs from 11 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv442223 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 25,112,297 | 25,272,004 |
nsv442223 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NW_003315936.1 | Chr11|NW_0 03315936.1 | 1 | 107,331 |
nsv442223 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 25,133,843 | 25,293,550 |
nsv442223 | Remapped | Pass | GRCh37.p13 | PATCHES | Second Pass | NW_003315936.1 | Chr11|NW_0 03315936.1 | 1 | 107,331 |
nsv442223 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000011.8 | Chr11 | 25,090,419 | 25,250,126 |
Variant Call Information
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv1659261 | Remapped | Pass | NW_003315936.1:g.( ?_1)_(107331_?)del | GRCh38.p12 | Second Pass | NW_003315936.1 | Chr11|NW_0 03315936.1 | 1 | 107,331 |
nssv1659262 | Remapped | Pass | NW_003315936.1:g.( ?_1)_(107331_?)del | GRCh38.p12 | Second Pass | NW_003315936.1 | Chr11|NW_0 03315936.1 | 1 | 107,331 |
nssv1659263 | Remapped | Pass | NW_003315936.1:g.( ?_1)_(107331_?)del | GRCh38.p12 | Second Pass | NW_003315936.1 | Chr11|NW_0 03315936.1 | 1 | 107,331 |
nssv1659261 | Remapped | Perfect | NC_000011.10:g.(?_ 25112297)_(2527200 4_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 25,112,297 | 25,272,004 |
nssv1659262 | Remapped | Perfect | NC_000011.10:g.(?_ 25112297)_(2527200 4_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 25,112,297 | 25,272,004 |
nssv1659263 | Remapped | Perfect | NC_000011.10:g.(?_ 25112297)_(2527200 4_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 25,112,297 | 25,272,004 |
nssv1659261 | Remapped | Pass | NW_003315936.1:g.( ?_1)_(107331_?)del | GRCh37.p13 | Second Pass | NW_003315936.1 | Chr11|NW_0 03315936.1 | 1 | 107,331 |
nssv1659262 | Remapped | Pass | NW_003315936.1:g.( ?_1)_(107331_?)del | GRCh37.p13 | Second Pass | NW_003315936.1 | Chr11|NW_0 03315936.1 | 1 | 107,331 |
nssv1659263 | Remapped | Pass | NW_003315936.1:g.( ?_1)_(107331_?)del | GRCh37.p13 | Second Pass | NW_003315936.1 | Chr11|NW_0 03315936.1 | 1 | 107,331 |
nssv1659261 | Remapped | Perfect | NC_000011.9:g.(?_2 5133843)_(25293550 _?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 25,133,843 | 25,293,550 |
nssv1659262 | Remapped | Perfect | NC_000011.9:g.(?_2 5133843)_(25293550 _?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 25,133,843 | 25,293,550 |
nssv1659263 | Remapped | Perfect | NC_000011.9:g.(?_2 5133843)_(25293550 _?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 25,133,843 | 25,293,550 |
nssv1659261 | Submitted genomic | NC_000011.8:g.(?_2 5090419)_(25250126 _?)del | NCBI35 (hg17) | NC_000011.8 | Chr11 | 25,090,419 | 25,250,126 | ||
nssv1659262 | Submitted genomic | NC_000011.8:g.(?_2 5090419)_(25250126 _?)del | NCBI35 (hg17) | NC_000011.8 | Chr11 | 25,090,419 | 25,250,126 | ||
nssv1659263 | Submitted genomic | NC_000011.8:g.(?_2 5090419)_(25250126 _?)del | NCBI35 (hg17) | NC_000011.8 | Chr11 | 25,090,419 | 25,250,126 |