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dbVar

Database of genomic structural variation

nsv442134

Organism: Homo sapiens

Study:nstd22 (McCarroll et al. 2008)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI35 (hg17)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:42,099

Publication(s):McCarroll et al. 2008

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 564 SVs from 59 studies. See in: genome view

Remapped(Score: Perfect):10,541,175-10,583,273

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv442134	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000009.12	Chr9	10,541,175	10,583,273
nsv442134	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000009.11	Chr9	10,541,175	10,583,273
nsv442134	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000009.9	Chr9	10,531,175	10,573,273

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv1658786	copy number loss	NA12752	SNP array	Probe signal intensity	1	165
nssv1658787	copy number loss	NA12760	SNP array	Probe signal intensity	1	153

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1658786	Remapped	Perfect	NC_000009.12:g.(?_ 10541175)_(1058327 3_?)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	10,541,175	10,583,273
nssv1658787	Remapped	Perfect	NC_000009.12:g.(?_ 10541175)_(1058327 3_?)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	10,541,175	10,583,273
nssv1658786	Remapped	Perfect	NC_000009.11:g.(?_ 10541175)_(1058327 3_?)del	GRCh37.p13	First Pass	NC_000009.11	Chr9	10,541,175	10,583,273
nssv1658787	Remapped	Perfect	NC_000009.11:g.(?_ 10541175)_(1058327 3_?)del	GRCh37.p13	First Pass	NC_000009.11	Chr9	10,541,175	10,583,273
nssv1658786	Submitted genomic		NC_000009.9:g.(?_1 0531175)_(10573273 _?)del	NCBI35 (hg17)		NC_000009.9	Chr9	10,531,175	10,573,273
nssv1658787	Submitted genomic		NC_000009.9:g.(?_1 0531175)_(10573273 _?)del	NCBI35 (hg17)		NC_000009.9	Chr9	10,531,175	10,573,273

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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