nsv437998
- Organism: Homo sapiens
- Study:nstd20 (McCarroll et al. 2006)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI34 (hg16)
- Variant Calls:4
- Validation:Not tested
- Clinical Assertions: No
- Region Size:43,621
- Publication(s):McCarroll et al. 2006
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 499 SVs from 60 studies. See in: genome view
Overlapping variant regions from other studies: 499 SVs from 60 studies. See in: genome view
Overlapping variant regions from other studies: 1 SVs from 1 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv437998 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 111,198,042 | 111,241,662 |
| nsv437998 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000007.13 | Chr7 | 110,838,098 | 110,881,718 |
| nsv437998 | Submitted genomic | NCBI34 (hg16) | Primary Assembly | NC_000007.10 | Chr7 | 110,398,629 | 110,442,249 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv469066 | copy number loss | NA11995 | SNP array | SNP genotyping analysis | 18 |
| nssv469067 | copy number loss | NA10861 | SNP array | SNP genotyping analysis | 20 |
| nssv469064 | copy number loss | NA11995 | SNP array | SNP genotyping analysis | 18 |
| nssv469065 | copy number loss | NA10861 | SNP array | SNP genotyping analysis | 20 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv469066 | Remapped | Perfect | NC_000007.14:g.(?_ 111198042)_(111241 662_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 111,198,042 | 111,241,662 |
| nssv469067 | Remapped | Perfect | NC_000007.14:g.(?_ 111198042)_(111241 662_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 111,198,042 | 111,241,662 |
| nssv469064 | Remapped | Perfect | NC_000007.14:g.(?_ 111200180)_(111239 195_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 111,200,180 | 111,239,195 |
| nssv469065 | Remapped | Perfect | NC_000007.14:g.(?_ 111200180)_(111239 195_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 111,200,180 | 111,239,195 |
| nssv469066 | Remapped | Perfect | NC_000007.13:g.(?_ 110838098)_(110881 718_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 110,838,098 | 110,881,718 |
| nssv469067 | Remapped | Perfect | NC_000007.13:g.(?_ 110838098)_(110881 718_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 110,838,098 | 110,881,718 |
| nssv469064 | Remapped | Perfect | NC_000007.13:g.(?_ 110840236)_(110879 251_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 110,840,236 | 110,879,251 |
| nssv469065 | Remapped | Perfect | NC_000007.13:g.(?_ 110840236)_(110879 251_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 110,840,236 | 110,879,251 |
| nssv469066 | Submitted genomic | NC_000007.10:g.(?_ 110398629)_(110442 249_?)del | NCBI34 (hg16) | NC_000007.10 | Chr7 | 110,398,629 | 110,442,249 | ||
| nssv469067 | Submitted genomic | NC_000007.10:g.(?_ 110398629)_(110442 249_?)del | NCBI34 (hg16) | NC_000007.10 | Chr7 | 110,398,629 | 110,442,249 | ||
| nssv469064 | Submitted genomic | NC_000007.10:g.(?_ 110400767)_(110439 782_?)del | NCBI34 (hg16) | NC_000007.10 | Chr7 | 110,400,767 | 110,439,782 | ||
| nssv469065 | Submitted genomic | NC_000007.10:g.(?_ 110400767)_(110439 782_?)del | NCBI34 (hg16) | NC_000007.10 | Chr7 | 110,400,767 | 110,439,782 |