nsv4379773
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:30
- Validation:Not tested
- Clinical Assertions: No
- Region Size:55,070
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 528 SVs from 77 studies. See in: genome view
Overlapping variant regions from other studies: 589 SVs from 77 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4379773 | Remapped | Pass | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nsv4379773 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15611795 | copy number loss | 1-0655-003 | SNP array | Genotyping | 23 |
| nssv15614988 | copy number loss | 1-0714-003 | SNP array | Genotyping | 21 |
| nssv15619072 | copy number loss | 1-0913-003 | SNP array | Genotyping | 25 |
| nssv15619763 | copy number loss | 1-0906-003 | SNP array | Genotyping | 26 |
| nssv15621497 | copy number loss | 1-1020-002 | SNP array | Genotyping | 14 |
| nssv15621551 | copy number loss | 1-1004-003 | SNP array | Genotyping | 21 |
| nssv15621810 | copy number loss | 1-1037-003 | SNP array | Genotyping | 24 |
| nssv15621879 | copy number loss | 1-1041-003 | SNP array | Genotyping | 26 |
| nssv15627515 | copy number loss | 1-0488-001 | SNP array | Genotyping | 15 |
| nssv15631863 | copy number loss | 10-1120-001 | SNP array | Genotyping | 18 |
| nssv15631946 | copy number loss | 1-1061-003 | SNP array | Genotyping | 19 |
| nssv15648674 | copy number gain | 2-1280-003 | SNP array | Genotyping | 12 |
| nssv15648799 | copy number loss | 2-1286-003 | SNP array | Genotyping | 20 |
| nssv15651664 | copy number loss | 2-1528-002 | SNP array | Genotyping | 26 |
| nssv15651739 | copy number loss | 2-1567-002 | SNP array | Genotyping | 21 |
| nssv15653296 | copy number loss | 2-1693-003 | SNP array | Genotyping | 25 |
| nssv15653754 | copy number loss | 2-1629-003 | SNP array | Genotyping | 16 |
| nssv15655888 | copy number loss | 2-1744-003 | SNP array | Genotyping | 19 |
| nssv15655983 | copy number loss | 2-1751-003 | SNP array | Genotyping | 25 |
| nssv15656824 | copy number loss | 3-0616-000 | SNP array | Genotyping | 21 |
| nssv15657139 | copy number loss | 2-1759-003 | SNP array | Genotyping | 22 |
| nssv15658078 | copy number loss | 3-0607-001 | SNP array | Genotyping | 17 |
| nssv15658894 | copy number loss | 3-0632-000 | SNP array | Genotyping | 28 |
| nssv15659571 | copy number loss | 3-0774-000 | SNP array | Genotyping | 23 |
| nssv15659591 | copy number loss | 3-0775-000 | SNP array | Genotyping | 18 |
| nssv15661111 | copy number loss | 4-0079-001 | SNP array | Genotyping | 28 |
| nssv15668353 | copy number loss | 7-0191-003 | SNP array | Genotyping | 18 |
| nssv15670142 | copy number loss | 7-0258-004 | SNP array | Genotyping | 30 |
| nssv15681674 | copy number loss | 214416S | SNP array | Genotyping | 21 |
| nssv15702328 | copy number loss | 198407 | SNP array | Genotyping | 18 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15611795 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15614988 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15619072 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15619763 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15621497 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15621551 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15621810 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15621879 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15627515 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15631863 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15631946 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15648674 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)dup | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15648799 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15651664 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15651739 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15653296 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15653754 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15655888 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15655983 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15656824 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15657139 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15658078 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15658894 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15659571 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15659591 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15661111 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15668353 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15670142 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15681674 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15702328 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754572 5_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,725 |
| nssv15611795 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 | ||
| nssv15614988 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 | ||
| nssv15619072 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 | ||
| nssv15619763 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 | ||
| nssv15621497 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 | ||
| nssv15621551 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 | ||
| nssv15621810 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 | ||
| nssv15621879 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 | ||
| nssv15627515 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 | ||
| nssv15631863 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 | ||
| nssv15631946 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 | ||
| nssv15648674 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)dup | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 | ||
| nssv15648799 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 | ||
| nssv15651664 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 | ||
| nssv15651739 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 | ||
| nssv15653296 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 | ||
| nssv15653754 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 | ||
| nssv15655888 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 | ||
| nssv15655983 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 | ||
| nssv15656824 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 | ||
| nssv15657139 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 | ||
| nssv15658078 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 | ||
| nssv15658894 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 | ||
| nssv15659571 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 | ||
| nssv15659591 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 | ||
| nssv15661111 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 | ||
| nssv15668353 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 | ||
| nssv15670142 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 | ||
| nssv15681674 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 | ||
| nssv15702328 | Submitted genomic | NC_000002.11:g.(?_ 98063359)_(9816218 8_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,359 | 98,162,188 |