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dbVar

Database of genomic structural variation

nsv4371180

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:288,773

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 3733 SVs from 104 studies. See in: genome view

Remapped(Score: Perfect):11,782,269-12,071,041

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4371180	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000009.12	Chr9	11,782,269	12,071,041
nsv4371180	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000009.11	Chr9	11,782,269	12,071,041

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15614786	copy number loss	1-0756-002	SNP array	Genotyping	17
nssv15614804	copy number loss	1-0756-003	SNP array	Genotyping	18
nssv15614841	copy number loss	1-0756-005	SNP array	Genotyping	15

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15614786	Remapped	Perfect	NC_000009.12:g.(?_ 11782269)_(1207104 1_?)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	11,782,269	12,071,041
nssv15614804	Remapped	Perfect	NC_000009.12:g.(?_ 11782269)_(1207104 1_?)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	11,782,269	12,071,041
nssv15614841	Remapped	Perfect	NC_000009.12:g.(?_ 11782269)_(1207104 1_?)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	11,782,269	12,071,041
nssv15614786	Submitted genomic		NC_000009.11:g.(?_ 11782269)_(1207104 1_?)del	GRCh37 (hg19)		NC_000009.11	Chr9	11,782,269	12,071,041
nssv15614804	Submitted genomic		NC_000009.11:g.(?_ 11782269)_(1207104 1_?)del	GRCh37 (hg19)		NC_000009.11	Chr9	11,782,269	12,071,041
nssv15614841	Submitted genomic		NC_000009.11:g.(?_ 11782269)_(1207104 1_?)del	GRCh37 (hg19)		NC_000009.11	Chr9	11,782,269	12,071,041

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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