nsv436657
- Organism: Homo sapiens
- Study:nstd16 (Korbel et al. 2007)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Yes
- Clinical Assertions: No
- Region Size:23,352
- Publication(s):Korbel et al. 2007
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 356 SVs from 73 studies. See in: genome view
Overlapping variant regions from other studies: 356 SVs from 73 studies. See in: genome view
Overlapping variant regions from other studies: 148 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv436657 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 1,914,842 | 1,938,193 |
| nsv436657 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 1,936,072 | 1,959,423 |
| nsv436657 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000011.8 | Chr11 | 1,892,648 | 1,915,999 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv466634 | inversion | SAMN00001583 | Sequencing | Paired-end mapping | 822 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv466634 | Remapped | Perfect | NC_000011.10:g.(19 14842_?)_(?_193819 3)inv | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 1,914,842 | 1,938,193 |
| nssv466634 | Remapped | Perfect | NC_000011.9:g.(193 6072_?)_(?_1959423 )inv | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 1,936,072 | 1,959,423 |
| nssv466634 | Submitted genomic | NC_000011.8:g.(189 2648_?)_(?_1915999 )inv | NCBI36 (hg18) | NC_000011.8 | Chr11 | 1,892,648 | 1,915,999 |
Validation Information
| Variant Call ID | Experiment ID | Sample ID | Method | Analysis | Result |
|---|---|---|---|---|---|
| nssv466634 | 4 | SAMN00001583 | PCR | Manual observation | Pass |