nsv435965
- Organism: Homo sapiens
- Study:nstd16 (Korbel et al. 2007)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Yes
- Clinical Assertions: No
- Region Size:10,874
- Publication(s):Korbel et al. 2007
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 442 SVs from 61 studies. See in: genome view
Overlapping variant regions from other studies: 358 SVs from 54 studies. See in: genome view
Overlapping variant regions from other studies: 122 SVs from 17 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv435965 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 62,805,656 | 62,816,529 |
| nsv435965 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 66,461,480 | 66,472,353 |
| nsv435965 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 66,201,300 | 66,212,173 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv466523 | inversion | SAMN00000376 | Sequencing | Paired-end mapping | 468 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv466523 | Remapped | Perfect | NC_000009.12:g.(62 805656_?)_(?_62816 529)inv | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 62,805,656 | 62,816,529 |
| nssv466523 | Remapped | Perfect | NC_000009.11:g.(66 461480_?)_(?_66472 353)inv | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 66,461,480 | 66,472,353 |
| nssv466523 | Submitted genomic | NC_000009.10:g.(66 201300_?)_(?_66212 173)inv | NCBI36 (hg18) | NC_000009.10 | Chr9 | 66,201,300 | 66,212,173 |
Validation Information
| Variant Call ID | Experiment ID | Sample ID | Method | Analysis | Result |
|---|---|---|---|---|---|
| nssv466523 | 4 | SAMN00000376 | PCR | Manual observation | Pass |