nsv3909639
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:40,234
- Description:GRCh37/hg19 20p12.1(chr20:15062923-15103156) AND Abnormal esophagus morphology
- Publication(s):Brosens et al. 2016
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 691 SVs from 65 studies. See in: genome view
Overlapping variant regions from other studies: 691 SVs from 65 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3909639 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000020.11 | Chr20 | 15,082,277 | 15,122,510 |
| nsv3909639 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000020.10 | Chr20 | 15,062,923 | 15,103,156 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID |
|---|---|---|---|---|---|---|---|
| nssv15126106 | copy number loss | Multiple | Multiple | Abnormal esophagus morphology; Abnormality of esophagus morphology | Benign | ClinVar | RCV000416929.1, VCV000226270.1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15126106 | Remapped | Perfect | NC_000020.11:g.(?_ 15082277)_(1512251 0_?)del | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 15,082,277 | 15,122,510 |
| nssv15126106 | Submitted genomic | NC_000020.10:g.(?_ 15062923)_(1510315 6_?)del | GRCh37 (hg19) | NC_000020.10 | Chr20 | 15,062,923 | 15,103,156 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID |
|---|---|---|---|---|---|---|---|
| nssv15126106 | GRCh37: NC_000020.10:g.(?_15062923)_(15103156_?)del | copy number loss | maternal | Abnormal esophagus morphology; Abnormality of esophagus morphology | Benign | ClinVar | RCV000416929.1, VCV000226270.1 |