nsv3873989
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:51,604
- Description:GRCh37/hg19 3p12.1(chr3:85561190-85612793) AND Abnormal esophagus morphology
- Publication(s):Brosens et al. 2016
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 361 SVs from 54 studies. See in: genome view
Overlapping variant regions from other studies: 361 SVs from 54 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3873989 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 85,512,040 | 85,563,643 |
| nsv3873989 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 85,561,190 | 85,612,793 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID |
|---|---|---|---|---|---|---|---|
| nssv15125347 | copy number loss | Multiple | Multiple | Abnormal esophagus morphology; Abnormality of esophagus morphology | Benign | ClinVar | RCV000416673.1, VCV000226159.1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15125347 | Remapped | Perfect | NC_000003.12:g.(?_ 85512040)_(8556364 3_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 85,512,040 | 85,563,643 |
| nssv15125347 | Submitted genomic | NC_000003.11:g.(?_ 85561190)_(8561279 3_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 85,561,190 | 85,612,793 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID |
|---|---|---|---|---|---|---|---|
| nssv15125347 | GRCh37: NC_000003.11:g.(?_85561190)_(85612793_?)del | copy number loss | unknown | Abnormal esophagus morphology; Abnormality of esophagus morphology | Benign | ClinVar | RCV000416673.1, VCV000226159.1 |