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dbVar

Database of genomic structural variation

nsv3565933

Organism: Homo sapiens

Study:nstd152 (Chaisson et al. 2019)
Variant Type:mobile element insertion
Method Type:Sequencing
Submitted on:GRCh38 (hg38)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:1

Description:Insertion of a Alu mobile element relative to the reference
Publication(s):Chaisson et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 440 SVs from 38 studies. See in: genome view

Submitted genomic107,570,242-107,570,272

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv3565933	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000023.11	ChrX	107,570,257 (-15, +15)	107,570,257 (-15, +15)
nsv3565933	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000023.10	ChrX	106,813,487 (-15, +15)	106,813,487 (-15, +15)

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Zygosity	Other Calls in this Sample and Study
nssv14353849	alu insertion	SAMN00006466	Sequencing	Sequence alignment	Heterozygous	14,137
nssv14353850	alu insertion	HG00514	Sequencing	Sequence alignment	Heterozygous	39,861
nssv14353851	alu insertion	SAMN00006580	Sequencing	Sequence alignment	Heterozygous	14,212
nssv14353852	alu insertion	SAMN00006581	Sequencing	Sequence alignment	Heterozygous	41,185
nssv14353853	alu insertion	SAMN00001694	Sequencing	Sequence alignment	Heterozygous	16,419

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv14353849	Submitted genomic		NC_000023.11:g.(10 7570242_107570272) _(107570242_107570 272)ins281	GRCh38 (hg38)		NC_000023.11	ChrX	107,570,257 (-15, +15)	107,570,257 (-15, +15)
nssv14353850	Submitted genomic		NC_000023.11:g.(10 7570242_107570272) _(107570242_107570 272)ins281	GRCh38 (hg38)		NC_000023.11	ChrX	107,570,257 (-15, +15)	107,570,257 (-15, +15)
nssv14353851	Submitted genomic		NC_000023.11:g.(10 7570242_107570272) _(107570242_107570 272)ins281	GRCh38 (hg38)		NC_000023.11	ChrX	107,570,257 (-15, +15)	107,570,257 (-15, +15)
nssv14353852	Submitted genomic		NC_000023.11:g.(10 7570242_107570272) _(107570242_107570 272)ins281	GRCh38 (hg38)		NC_000023.11	ChrX	107,570,257 (-15, +15)	107,570,257 (-15, +15)
nssv14353853	Submitted genomic		NC_000023.11:g.(10 7570242_107570272) _(107570242_107570 272)ins281	GRCh38 (hg38)		NC_000023.11	ChrX	107,570,257 (-15, +15)	107,570,257 (-15, +15)
nssv14353849	Remapped	Perfect	NC_000023.10:g.(10 6813472_106813502) _(106813472_106813 502)ins281	GRCh37.p13	First Pass	NC_000023.10	ChrX	106,813,487 (-15, +15)	106,813,487 (-15, +15)
nssv14353850	Remapped	Perfect	NC_000023.10:g.(10 6813472_106813502) _(106813472_106813 502)ins281	GRCh37.p13	First Pass	NC_000023.10	ChrX	106,813,487 (-15, +15)	106,813,487 (-15, +15)
nssv14353851	Remapped	Perfect	NC_000023.10:g.(10 6813472_106813502) _(106813472_106813 502)ins281	GRCh37.p13	First Pass	NC_000023.10	ChrX	106,813,487 (-15, +15)	106,813,487 (-15, +15)
nssv14353852	Remapped	Perfect	NC_000023.10:g.(10 6813472_106813502) _(106813472_106813 502)ins281	GRCh37.p13	First Pass	NC_000023.10	ChrX	106,813,487 (-15, +15)	106,813,487 (-15, +15)
nssv14353853	Remapped	Perfect	NC_000023.10:g.(10 6813472_106813502) _(106813472_106813 502)ins281	GRCh37.p13	First Pass	NC_000023.10	ChrX	106,813,487 (-15, +15)	106,813,487 (-15, +15)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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