nsv3412952
- Organism: Homo sapiens
- Study:nstd162 (Audano et al. 2019)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh38 (hg38)
- Variant Calls:10
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Audano et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 114 SVs from 29 studies. See in: genome view
Overlapping variant regions from other studies: 114 SVs from 29 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nsv3412952 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000007.14 | Chr7 | 83,460,627 | 83,460,627 | ||
nsv3412952 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000007.13 | Chr7 | 83,089,943 | 83,089,943 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv14732658 | herv insertion | SAMN03255769 | Sequencing | de novo and local sequence assembly | 21,134 |
nssv14732686 | herv insertion | SAMN09651199 | Sequencing | de novo and local sequence assembly | 27,381 |
nssv14734576 | herv insertion | SAMN04229548 | Sequencing | de novo and local sequence assembly | 23,009 |
nssv14738289 | herv insertion | SAMN04251426 | Sequencing | de novo and local sequence assembly | 22,074 |
nssv14740128 | herv insertion | SAMN05603847 | Sequencing | de novo and local sequence assembly | 26,021 |
nssv14742437 | herv insertion | SAMN03838746 | Sequencing | de novo and local sequence assembly | 26,336 |
nssv14744099 | herv insertion | SAMN09643900 | Sequencing | de novo and local sequence assembly | 26,631 |
nssv14746394 | herv insertion | SAMN02744161 | Sequencing | de novo and local sequence assembly | 20,941 |
nssv14747314 | herv insertion | SAMN09690649 | Sequencing | de novo and local sequence assembly | 21,495 |
nssv14747523 | herv insertion | SAMN04229552 | Sequencing | de novo and local sequence assembly | 24,632 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nssv14732658 | Submitted genomic | NC_000007.14:g.834 60627_83460628ins6 4 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 83,460,627 | 83,460,627 | ||
nssv14732686 | Submitted genomic | NC_000007.14:g.834 60627_83460628ins6 4 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 83,460,627 | 83,460,627 | ||
nssv14734576 | Submitted genomic | NC_000007.14:g.834 60627_83460628ins6 4 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 83,460,627 | 83,460,627 | ||
nssv14738289 | Submitted genomic | NC_000007.14:g.834 60627_83460628ins6 4 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 83,460,627 | 83,460,627 | ||
nssv14740128 | Submitted genomic | NC_000007.14:g.834 60627_83460628ins6 4 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 83,460,627 | 83,460,627 | ||
nssv14742437 | Submitted genomic | NC_000007.14:g.834 60627_83460628ins6 4 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 83,460,627 | 83,460,627 | ||
nssv14744099 | Submitted genomic | NC_000007.14:g.834 60627_83460628ins6 4 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 83,460,627 | 83,460,627 | ||
nssv14746394 | Submitted genomic | NC_000007.14:g.834 60627_83460628ins6 4 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 83,460,627 | 83,460,627 | ||
nssv14747314 | Submitted genomic | NC_000007.14:g.834 60627_83460628ins6 4 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 83,460,627 | 83,460,627 | ||
nssv14747523 | Submitted genomic | NC_000007.14:g.834 60627_83460628ins6 4 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 83,460,627 | 83,460,627 | ||
nssv14732658 | Remapped | Perfect | NC_000007.13:g.830 89943_83089944ins6 4NC_000007.13:g.83 089943_83089944ins 64 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 83,089,943 | 83,089,943 |
nssv14732686 | Remapped | Perfect | NC_000007.13:g.830 89943_83089944ins6 4NC_000007.13:g.83 089943_83089944ins 64 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 83,089,943 | 83,089,943 |
nssv14734576 | Remapped | Perfect | NC_000007.13:g.830 89943_83089944ins6 4NC_000007.13:g.83 089943_83089944ins 64 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 83,089,943 | 83,089,943 |
nssv14738289 | Remapped | Perfect | NC_000007.13:g.830 89943_83089944ins6 4NC_000007.13:g.83 089943_83089944ins 64 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 83,089,943 | 83,089,943 |
nssv14740128 | Remapped | Perfect | NC_000007.13:g.830 89943_83089944ins6 4NC_000007.13:g.83 089943_83089944ins 64 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 83,089,943 | 83,089,943 |
nssv14742437 | Remapped | Perfect | NC_000007.13:g.830 89943_83089944ins6 4NC_000007.13:g.83 089943_83089944ins 64 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 83,089,943 | 83,089,943 |
nssv14744099 | Remapped | Perfect | NC_000007.13:g.830 89943_83089944ins6 4NC_000007.13:g.83 089943_83089944ins 64 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 83,089,943 | 83,089,943 |
nssv14746394 | Remapped | Perfect | NC_000007.13:g.830 89943_83089944ins6 4NC_000007.13:g.83 089943_83089944ins 64 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 83,089,943 | 83,089,943 |
nssv14747314 | Remapped | Perfect | NC_000007.13:g.830 89943_83089944ins6 4NC_000007.13:g.83 089943_83089944ins 64 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 83,089,943 | 83,089,943 |
nssv14747523 | Remapped | Perfect | NC_000007.13:g.830 89943_83089944ins6 4NC_000007.13:g.83 089943_83089944ins 64 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 83,089,943 | 83,089,943 |