nsv3371335

Organism: Homo sapiens

Study:nstd162 (Audano et al. 2019)
Variant Type:mobile element insertion
Method Type:Sequencing
Submitted on:GRCh38 (hg38)

Variant Calls:12
Validation:Not tested
Clinical Assertions: No
Region Size:1

Publication(s):Audano et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 147 SVs from 29 studies. See in: genome view

Submitted genomic192,131,144-192,131,144

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv3371335	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000002.12	Chr2	192,131,144	192,131,144
nsv3371335	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000002.11	Chr2	192,995,870	192,995,870

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14634326	herv insertion	SAMN09690649	Sequencing	de novo and local sequence assembly	21,495
nssv14640236	herv insertion	SAMN03255769	Sequencing	de novo and local sequence assembly	21,134
nssv14640375	herv insertion	SAMN04229552	Sequencing	de novo and local sequence assembly	24,632
nssv14640488	herv insertion	SAMN09643900	Sequencing	de novo and local sequence assembly	26,631
nssv14642702	herv insertion	SAMN06885952	Sequencing	de novo and local sequence assembly	28,070
nssv14643761	herv insertion	SAMN02744161	Sequencing	de novo and local sequence assembly	20,941
nssv14643970	herv insertion	SAMN05603847	Sequencing	de novo and local sequence assembly	26,021
nssv14646156	herv insertion	SAMN04229548	Sequencing	de novo and local sequence assembly	23,009
nssv14646563	herv insertion	SAMN05603729	Sequencing	de novo and local sequence assembly	24,108
nssv14647705	herv insertion	SAMN03838746	Sequencing	de novo and local sequence assembly	26,336
nssv14647763	herv insertion	SAMN09651199	Sequencing	de novo and local sequence assembly	27,381
nssv14649106	herv insertion	SAMN05603745	Sequencing	de novo and local sequence assembly	27,447

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv14634326	Submitted genomic		NC_000002.12:g.192 131144_192131145in s61	GRCh38 (hg38)		NC_000002.12	Chr2	192,131,144	192,131,144
nssv14640236	Submitted genomic		NC_000002.12:g.192 131144_192131145in s61	GRCh38 (hg38)		NC_000002.12	Chr2	192,131,144	192,131,144
nssv14640375	Submitted genomic		NC_000002.12:g.192 131144_192131145in s61	GRCh38 (hg38)		NC_000002.12	Chr2	192,131,144	192,131,144
nssv14640488	Submitted genomic		NC_000002.12:g.192 131144_192131145in s61	GRCh38 (hg38)		NC_000002.12	Chr2	192,131,144	192,131,144
nssv14642702	Submitted genomic		NC_000002.12:g.192 131144_192131145in s61	GRCh38 (hg38)		NC_000002.12	Chr2	192,131,144	192,131,144
nssv14643761	Submitted genomic		NC_000002.12:g.192 131144_192131145in s61	GRCh38 (hg38)		NC_000002.12	Chr2	192,131,144	192,131,144
nssv14643970	Submitted genomic		NC_000002.12:g.192 131144_192131145in s61	GRCh38 (hg38)		NC_000002.12	Chr2	192,131,144	192,131,144
nssv14646156	Submitted genomic		NC_000002.12:g.192 131144_192131145in s61	GRCh38 (hg38)		NC_000002.12	Chr2	192,131,144	192,131,144
nssv14646563	Submitted genomic		NC_000002.12:g.192 131144_192131145in s61	GRCh38 (hg38)		NC_000002.12	Chr2	192,131,144	192,131,144
nssv14647705	Submitted genomic		NC_000002.12:g.192 131144_192131145in s61	GRCh38 (hg38)		NC_000002.12	Chr2	192,131,144	192,131,144
nssv14647763	Submitted genomic		NC_000002.12:g.192 131144_192131145in s61	GRCh38 (hg38)		NC_000002.12	Chr2	192,131,144	192,131,144
nssv14649106	Submitted genomic		NC_000002.12:g.192 131144_192131145in s61	GRCh38 (hg38)		NC_000002.12	Chr2	192,131,144	192,131,144
nssv14634326	Remapped	Perfect	NC_000002.11:g.192 995870_192995871in s61NC_000002.11:g. 192995870_19299587 1ins61	GRCh37.p13	First Pass	NC_000002.11	Chr2	192,995,870	192,995,870
nssv14640236	Remapped	Perfect	NC_000002.11:g.192 995870_192995871in s61NC_000002.11:g. 192995870_19299587 1ins61	GRCh37.p13	First Pass	NC_000002.11	Chr2	192,995,870	192,995,870
nssv14640375	Remapped	Perfect	NC_000002.11:g.192 995870_192995871in s61NC_000002.11:g. 192995870_19299587 1ins61	GRCh37.p13	First Pass	NC_000002.11	Chr2	192,995,870	192,995,870
nssv14640488	Remapped	Perfect	NC_000002.11:g.192 995870_192995871in s61NC_000002.11:g. 192995870_19299587 1ins61	GRCh37.p13	First Pass	NC_000002.11	Chr2	192,995,870	192,995,870
nssv14642702	Remapped	Perfect	NC_000002.11:g.192 995870_192995871in s61NC_000002.11:g. 192995870_19299587 1ins61	GRCh37.p13	First Pass	NC_000002.11	Chr2	192,995,870	192,995,870
nssv14643761	Remapped	Perfect	NC_000002.11:g.192 995870_192995871in s61NC_000002.11:g. 192995870_19299587 1ins61	GRCh37.p13	First Pass	NC_000002.11	Chr2	192,995,870	192,995,870
nssv14643970	Remapped	Perfect	NC_000002.11:g.192 995870_192995871in s61NC_000002.11:g. 192995870_19299587 1ins61	GRCh37.p13	First Pass	NC_000002.11	Chr2	192,995,870	192,995,870
nssv14646156	Remapped	Perfect	NC_000002.11:g.192 995870_192995871in s61NC_000002.11:g. 192995870_19299587 1ins61	GRCh37.p13	First Pass	NC_000002.11	Chr2	192,995,870	192,995,870
nssv14646563	Remapped	Perfect	NC_000002.11:g.192 995870_192995871in s61NC_000002.11:g. 192995870_19299587 1ins61	GRCh37.p13	First Pass	NC_000002.11	Chr2	192,995,870	192,995,870
nssv14647705	Remapped	Perfect	NC_000002.11:g.192 995870_192995871in s61NC_000002.11:g. 192995870_19299587 1ins61	GRCh37.p13	First Pass	NC_000002.11	Chr2	192,995,870	192,995,870
nssv14647763	Remapped	Perfect	NC_000002.11:g.192 995870_192995871in s61NC_000002.11:g. 192995870_19299587 1ins61	GRCh37.p13	First Pass	NC_000002.11	Chr2	192,995,870	192,995,870
nssv14649106	Remapped	Perfect	NC_000002.11:g.192 995870_192995871in s61NC_000002.11:g. 192995870_19299587 1ins61	GRCh37.p13	First Pass	NC_000002.11	Chr2	192,995,870	192,995,870

Showing 24 of 36

dbVar

Database of genomic structural variation

nsv3371335

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant