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dbVar

Database of genomic structural variation

nsv3352206

Organism: Homo sapiens

Study:nstd162 (Audano et al. 2019)
Variant Type:mobile element insertion
Method Type:Sequencing
Submitted on:GRCh38 (hg38)

Variant Calls:8
Validation:Not tested
Clinical Assertions: No
Region Size:1

Publication(s):Audano et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 181 SVs from 30 studies. See in: genome view

Submitted genomic86,278,796-86,278,796

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv3352206	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000016.10	Chr16	86,278,796	86,278,796
nsv3352206	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	86,312,402	86,312,402

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14572302	herv insertion	SAMN05181962	Sequencing	de novo and local sequence assembly	23,563
nssv14579240	herv insertion	SAMN09643900	Sequencing	de novo and local sequence assembly	26,631
nssv14579388	herv insertion	SAMN05603847	Sequencing	de novo and local sequence assembly	26,021
nssv14581341	herv insertion	SAMN05603729	Sequencing	de novo and local sequence assembly	24,108
nssv14582576	herv insertion	SAMN04251426	Sequencing	de novo and local sequence assembly	22,074
nssv14585273	herv insertion	SAMN09651199	Sequencing	de novo and local sequence assembly	27,381
nssv14585736	herv insertion	SAMN06885952	Sequencing	de novo and local sequence assembly	28,070
nssv14586285	herv insertion	SAMN09690649	Sequencing	de novo and local sequence assembly	21,495

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv14572302	Submitted genomic		NC_000016.10:g.862 78796_86278797ins5 8	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,796	86,278,796
nssv14579240	Submitted genomic		NC_000016.10:g.862 78796_86278797ins5 8	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,796	86,278,796
nssv14579388	Submitted genomic		NC_000016.10:g.862 78796_86278797ins5 8	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,796	86,278,796
nssv14581341	Submitted genomic		NC_000016.10:g.862 78796_86278797ins5 8	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,796	86,278,796
nssv14582576	Submitted genomic		NC_000016.10:g.862 78796_86278797ins5 8	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,796	86,278,796
nssv14585273	Submitted genomic		NC_000016.10:g.862 78796_86278797ins5 8	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,796	86,278,796
nssv14585736	Submitted genomic		NC_000016.10:g.862 78796_86278797ins5 8	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,796	86,278,796
nssv14586285	Submitted genomic		NC_000016.10:g.862 78796_86278797ins5 8	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,796	86,278,796
nssv14572302	Remapped	Perfect	NC_000016.9:g.8631 2402_86312403ins58 NC_000016.9:g.8631 2402_86312403ins58	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,402	86,312,402
nssv14579240	Remapped	Perfect	NC_000016.9:g.8631 2402_86312403ins58 NC_000016.9:g.8631 2402_86312403ins58	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,402	86,312,402
nssv14579388	Remapped	Perfect	NC_000016.9:g.8631 2402_86312403ins58 NC_000016.9:g.8631 2402_86312403ins58	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,402	86,312,402
nssv14581341	Remapped	Perfect	NC_000016.9:g.8631 2402_86312403ins58 NC_000016.9:g.8631 2402_86312403ins58	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,402	86,312,402
nssv14582576	Remapped	Perfect	NC_000016.9:g.8631 2402_86312403ins58 NC_000016.9:g.8631 2402_86312403ins58	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,402	86,312,402
nssv14585273	Remapped	Perfect	NC_000016.9:g.8631 2402_86312403ins58 NC_000016.9:g.8631 2402_86312403ins58	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,402	86,312,402
nssv14585736	Remapped	Perfect	NC_000016.9:g.8631 2402_86312403ins58 NC_000016.9:g.8631 2402_86312403ins58	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,402	86,312,402
nssv14586285	Remapped	Perfect	NC_000016.9:g.8631 2402_86312403ins58 NC_000016.9:g.8631 2402_86312403ins58	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,402	86,312,402

Showing 16 of 24

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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