nsv3350198
- Organism: Homo sapiens
- Study:nstd162 (Audano et al. 2019)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh38 (hg38)
- Variant Calls:3
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Audano et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 180 SVs from 29 studies. See in: genome view
Overlapping variant regions from other studies: 180 SVs from 29 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3350198 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000016.10 | Chr16 | 86,278,759 | 86,278,759 | ||
| nsv3350198 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000016.9 | Chr16 | 86,312,365 | 86,312,365 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14573985 | herv insertion | SAMN09690649 | Sequencing | de novo and local sequence assembly | 21,495 |
| nssv14585317 | herv insertion | SAMN05603729 | Sequencing | de novo and local sequence assembly | 24,108 |
| nssv14591769 | herv insertion | SAMN09643900 | Sequencing | de novo and local sequence assembly | 26,631 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14573985 | Submitted genomic | NC_000016.10:g.862 78759_86278760ins5 7 | GRCh38 (hg38) | NC_000016.10 | Chr16 | 86,278,759 | 86,278,759 | ||
| nssv14585317 | Submitted genomic | NC_000016.10:g.862 78759_86278760ins5 7 | GRCh38 (hg38) | NC_000016.10 | Chr16 | 86,278,759 | 86,278,759 | ||
| nssv14591769 | Submitted genomic | NC_000016.10:g.862 78759_86278760ins5 7 | GRCh38 (hg38) | NC_000016.10 | Chr16 | 86,278,759 | 86,278,759 | ||
| nssv14573985 | Remapped | Perfect | NC_000016.9:g.8631 2365_86312366ins57 NC_000016.9:g.8631 2365_86312366ins57 | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 86,312,365 | 86,312,365 |
| nssv14585317 | Remapped | Perfect | NC_000016.9:g.8631 2365_86312366ins57 NC_000016.9:g.8631 2365_86312366ins57 | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 86,312,365 | 86,312,365 |
| nssv14591769 | Remapped | Perfect | NC_000016.9:g.8631 2365_86312366ins57 NC_000016.9:g.8631 2365_86312366ins57 | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 86,312,365 | 86,312,365 |