nsv3317457
- Organism: Homo sapiens
- Study:nstd157 (Frenkel et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:145,950
- Publication(s):Frenkel et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1781 SVs from 90 studies. See in: genome view
Overlapping variant regions from other studies: 1781 SVs from 90 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3317457 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 111,413,766 | 111,559,715 |
| nsv3317457 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000007.13 | Chr7 | 111,053,822 | 111,199,771 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14470021 | copy number loss | M2297 | SNP array | SNP genotyping analysis | 19 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14470021 | Remapped | Perfect | NC_000007.14:g.(?_ 111413766)_(111559 715_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 111,413,766 | 111,559,715 |
| nssv14470021 | Submitted genomic | NC_000007.13:g.(?_ 111053822)_(111199 771_?)del | GRCh37 (hg19) | NC_000007.13 | Chr7 | 111,053,822 | 111,199,771 |