nsv3278340
- Organism: Homo sapiens
- Study:nstd152 (Chaisson et al. 2019)
- Variant Type:mobile element deletion
- Method Type:Optical mapping, Sequencing
- Submitted on:GRCh38 (hg38)
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:2,232
- Description:Absence of a SVA mobile element insertion that is present in the reference
- Publication(s):Chaisson et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 180 SVs from 49 studies. See in: genome view
Overlapping variant regions from other studies: 186 SVs from 50 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3278340 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000001.11 | Chr1 | 156,556,913 | 156,559,144 | ||
| nsv3278340 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 156,526,705 | 156,528,936 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14405067 | sva deletion | SAMN00001696 | Optical mapping, Sequencing | Optical mapping, Sequence alignment, de novo and local sequence assembly | 45,591 |
| nssv14432140 | sva deletion | HG00514 | Optical mapping, Sequencing | Optical mapping, Sequence alignment, de novo and local sequence assembly | 39,861 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14405067 | Submitted genomic | NC_000001.11:g.156 556913_156559144de l2231 | GRCh38 (hg38) | NC_000001.11 | Chr1 | 156,556,913 | 156,559,144 | ||
| nssv14432140 | Submitted genomic | NC_000001.11:g.156 556913_156559144de l2231 | GRCh38 (hg38) | NC_000001.11 | Chr1 | 156,556,913 | 156,559,144 | ||
| nssv14405067 | Remapped | Perfect | NC_000001.10:g.156 526705_156528936de l2231 | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 156,526,705 | 156,528,936 |
| nssv14432140 | Remapped | Perfect | NC_000001.10:g.156 526705_156528936de l2231 | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 156,526,705 | 156,528,936 |