nsv3239080
- Organism: Homo sapiens
- Study:nstd152 (Chaisson et al. 2019)
- Variant Type:sequence alteration
- Method Type:Sequencing
- Submitted on:GRCh38 (hg38)
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:218,414
- Publication(s):Chaisson et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1310 SVs from 86 studies. See in: genome view
Overlapping variant regions from other studies: 1310 SVs from 86 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3239080 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000001.11 | Chr1 | 189,356,879 (-11, +11) | 189,575,292 (-10, +12) | ||
| nsv3239080 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 189,326,009 (-11, +11) | 189,544,422 (-10, +12) |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Zygosity | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv14301439 | sequence alteration | SAMN00006466 | Sequencing | Sequence alignment | Heterozygous | 14,137 |
| nssv14301440 | sequence alteration | HG00514 | Sequencing | Sequence alignment | Heterozygous | 39,861 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv14301439 | Submitted genomic | GRCh38 (hg38) | NC_000001.11 | Chr1 | 189,356,879 (-11, +11) | 189,575,292 (-10, +12) | ||
| nssv14301440 | Submitted genomic | GRCh38 (hg38) | NC_000001.11 | Chr1 | 189,356,879 (-11, +11) | 189,575,292 (-10, +12) | ||
| nssv14301439 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 189,326,009 (-11, +11) | 189,544,422 (-10, +12) |
| nssv14301440 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 189,326,009 (-11, +11) | 189,544,422 (-10, +12) |