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dbVar

Database of genomic structural variation

nsv3190181

Organism: Homo sapiens

Study:nstd152 (Chaisson et al. 2019)
Variant Type:mobile element deletion
Method Type:Optical mapping, Sequencing
Submitted on:GRCh38 (hg38)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:4,515

Description:Absence of a AluY mobile element insertion that is present in the reference
Publication(s):Chaisson et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 170 SVs from 43 studies. See in: genome view

Submitted genomic178,959,871-178,964,385

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv3190181	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000005.10	Chr5	178,959,871	178,964,385
nsv3190181	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000005.9	Chr5	178,386,872	178,391,386

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14436160	alu deletion	HG00514	Optical mapping, Sequencing	Optical mapping, Sequence alignment, de novo and local sequence assembly	39,861

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv14436160	Submitted genomic		NC_000005.10:g.178 959871_178964385de l4514	GRCh38 (hg38)		NC_000005.10	Chr5	178,959,871	178,964,385
nssv14436160	Remapped	Perfect	NC_000005.9:g.1783 86872_178391386del 4514	GRCh37.p13	First Pass	NC_000005.9	Chr5	178,386,872	178,391,386

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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