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dbVar

Database of genomic structural variation

nsv3170159

Organism: Homo sapiens

Study:nstd156 (Fu et al. 2018)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:16,894

Publication(s):Fu et al. 2018

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 245 SVs from 67 studies. See in: genome view

Remapped(Score: Perfect):17,488,053-17,504,946

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv3170159	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	17,488,053	17,488,456	17,502,521	17,504,946
nsv3170159	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000003.11	Chr3	17,529,545	17,529,948	17,544,013	17,546,438
nsv3170159	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000003.10	Chr3	17,504,549	17,504,952	17,519,017	17,521,442

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv14242444	deletion	NGO_30	SNP array	SNP genotyping analysis	1	117
nssv14243320	deletion	NGO_35	SNP array	SNP genotyping analysis	1	111
nssv14247927	duplication	NGO_50	SNP array	SNP genotyping analysis	3	121

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv14242444	Remapped	Perfect	NC_000003.12:g.(17 488053_17488456)_( 17502521_17504946) del	GRCh38.p12	First Pass	NC_000003.12	Chr3	17,488,053	17,488,456	17,502,521	17,504,946
nssv14243320	Remapped	Perfect	NC_000003.12:g.(17 488053_17488456)_( 17502521_17504946) del	GRCh38.p12	First Pass	NC_000003.12	Chr3	17,488,053	17,488,456	17,502,521	17,504,946
nssv14247927	Remapped	Perfect	NC_000003.12:g.(17 488053_17488456)_( 17502521_17504946) dup	GRCh38.p12	First Pass	NC_000003.12	Chr3	17,488,053	17,488,456	17,502,521	17,504,946
nssv14242444	Remapped	Perfect	NC_000003.11:g.(17 529545_17529948)_( 17544013_17546438) del	GRCh37.p13	First Pass	NC_000003.11	Chr3	17,529,545	17,529,948	17,544,013	17,546,438
nssv14243320	Remapped	Perfect	NC_000003.11:g.(17 529545_17529948)_( 17544013_17546438) del	GRCh37.p13	First Pass	NC_000003.11	Chr3	17,529,545	17,529,948	17,544,013	17,546,438
nssv14247927	Remapped	Perfect	NC_000003.11:g.(17 529545_17529948)_( 17544013_17546438) dup	GRCh37.p13	First Pass	NC_000003.11	Chr3	17,529,545	17,529,948	17,544,013	17,546,438
nssv14242444	Submitted genomic		NC_000003.10:g.(17 504549_17504952)_( 17519017_17521442) del	NCBI36 (hg18)		NC_000003.10	Chr3	17,504,549	17,504,952	17,519,017	17,521,442
nssv14243320	Submitted genomic		NC_000003.10:g.(17 504549_17504952)_( 17519017_17521442) del	NCBI36 (hg18)		NC_000003.10	Chr3	17,504,549	17,504,952	17,519,017	17,521,442
nssv14247927	Submitted genomic		NC_000003.10:g.(17 504549_17504952)_( 17519017_17521442) dup	NCBI36 (hg18)		NC_000003.10	Chr3	17,504,549	17,504,952	17,519,017	17,521,442

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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