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dbVar

Database of genomic structural variation

nsv3170123

Organism: Homo sapiens

Study:nstd156 (Fu et al. 2018)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:112,998

Publication(s):Fu et al. 2018

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 520 SVs from 73 studies. See in: genome view

Remapped(Score: Perfect):18,666,789-18,779,786

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv3170123	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	18,666,789	18,688,534	18,771,852	18,779,786
nsv3170123	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	18,678,111	18,699,856	18,783,174	18,791,108
nsv3170123	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000016.8	Chr16	18,585,612	18,607,357	18,690,675	18,698,609

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv14250402	deletion	SNI_14	SNP array	SNP genotyping analysis	1	136
nssv14246538	deletion	NGO_49	SNP array	SNP genotyping analysis	1	122
nssv14248910	duplication	MLY_7	SNP array	SNP genotyping analysis	3	127

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv14250402	Remapped	Perfect	NC_000016.10:g.(18 666789_18666790)_( 18715910_18730788) del	GRCh38.p12	First Pass	NC_000016.10	Chr16	18,666,789	18,666,790	18,715,910	18,730,788
nssv14246538	Remapped	Perfect	NC_000016.10:g.(18 666789_18666790)_( 18759524_18768126) del	GRCh38.p12	First Pass	NC_000016.10	Chr16	18,666,789	18,666,790	18,759,524	18,768,126
nssv14248910	Remapped	Perfect	NC_000016.10:g.(18 666789_18666790)_( 18771852_18779786) dup	GRCh38.p12	First Pass	NC_000016.10	Chr16	18,666,789	18,666,790	18,771,852	18,779,786
nssv14250402	Remapped	Perfect	NC_000016.9:g.(186 78111_18678112)_(1 8727232_18742110)d el	GRCh37.p13	First Pass	NC_000016.9	Chr16	18,678,111	18,678,112	18,727,232	18,742,110
nssv14246538	Remapped	Perfect	NC_000016.9:g.(186 78111_18678112)_(1 8770846_18779448)d el	GRCh37.p13	First Pass	NC_000016.9	Chr16	18,678,111	18,678,112	18,770,846	18,779,448
nssv14248910	Remapped	Perfect	NC_000016.9:g.(186 78111_18678112)_(1 8783174_18791108)d up	GRCh37.p13	First Pass	NC_000016.9	Chr16	18,678,111	18,678,112	18,783,174	18,791,108
nssv14250402	Submitted genomic		NC_000016.8:g.(185 85612_18585613)_(1 8634733_18649611)d el	NCBI36 (hg18)		NC_000016.8	Chr16	18,585,612	18,585,613	18,634,733	18,649,611
nssv14246538	Submitted genomic		NC_000016.8:g.(185 85612_18585613)_(1 8678347_18686949)d el	NCBI36 (hg18)		NC_000016.8	Chr16	18,585,612	18,585,613	18,678,347	18,686,949
nssv14248910	Submitted genomic		NC_000016.8:g.(185 85612_18585613)_(1 8690675_18698609)d up	NCBI36 (hg18)		NC_000016.8	Chr16	18,585,612	18,585,613	18,690,675	18,698,609

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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