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dbVar

Database of genomic structural variation

nsv3169798

Organism: Homo sapiens

Study:nstd156 (Fu et al. 2018)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:95,276

Publication(s):Fu et al. 2018

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 369 SVs from 55 studies. See in: genome view

Remapped(Score: Perfect):126,108,555-126,203,830

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv3169798	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000009.12	Chr9	126,108,555	126,112,035	126,200,187	126,203,830
nsv3169798	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000009.11	Chr9	128,870,834	128,874,314	128,962,466	128,966,109
nsv3169798	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000009.10	Chr9	127,910,655	127,914,135	128,002,287	128,005,930

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv14242523	deletion	MLY_14	SNP array	SNP genotyping analysis	1	131
nssv14247254	duplication	NGO_1	SNP array	SNP genotyping analysis	4	139

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv14242523	Remapped	Perfect	NC_000009.12:g.(12 6108555_126112035) _(126200187_126203 830)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	126,108,555	126,112,035	126,200,187	126,203,830
nssv14247254	Remapped	Perfect	NC_000009.12:g.(12 6176512_126182006) _(126192030_126192 290)dup	GRCh38.p12	First Pass	NC_000009.12	Chr9	126,176,512	126,182,006	126,192,030	126,192,290
nssv14242523	Remapped	Perfect	NC_000009.11:g.(12 8870834_128874314) _(128962466_128966 109)del	GRCh37.p13	First Pass	NC_000009.11	Chr9	128,870,834	128,874,314	128,962,466	128,966,109
nssv14247254	Remapped	Perfect	NC_000009.11:g.(12 8938791_128944285) _(128954309_128954 569)dup	GRCh37.p13	First Pass	NC_000009.11	Chr9	128,938,791	128,944,285	128,954,309	128,954,569
nssv14242523	Submitted genomic		NC_000009.10:g.(12 7910655_127914135) _(128002287_128005 930)del	NCBI36 (hg18)		NC_000009.10	Chr9	127,910,655	127,914,135	128,002,287	128,005,930
nssv14247254	Submitted genomic		NC_000009.10:g.(12 7978612_127984106) _(127994130_127994 390)dup	NCBI36 (hg18)		NC_000009.10	Chr9	127,978,612	127,984,106	127,994,130	127,994,390

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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