nsv3169620
- Organism: Homo sapiens
- Study:nstd156 (Fu et al. 2018)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:24
- Validation:Not tested
- Clinical Assertions: No
- Region Size:15,142
- Publication(s):Fu et al. 2018
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 326 SVs from 68 studies. See in: genome view
Overlapping variant regions from other studies: 326 SVs from 68 studies. See in: genome view
Overlapping variant regions from other studies: 144 SVs from 24 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv3169620 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 54,920,517 | 54,923,330 | 54,932,839 | 54,935,658 |
| nsv3169620 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 56,680,277 | 56,683,090 | 56,692,599 | 56,695,418 |
| nsv3169620 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000010.9 | Chr10 | 56,350,283 | 56,353,096 | 56,362,605 | 56,365,424 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv14241218 | deletion | NGO_9 | SNP array | SNP genotyping analysis | 1 | 137 |
| nssv14241298 | deletion | NGO_6 | SNP array | SNP genotyping analysis | 1 | 141 |
| nssv14241354 | deletion | NGO_43 | SNP array | SNP genotyping analysis | 1 | 132 |
| nssv14241403 | deletion | NGO_5 | SNP array | SNP genotyping analysis | 1 | 120 |
| nssv14243577 | deletion | SNI_6 | SNP array | SNP genotyping analysis | 1 | 131 |
| nssv14243805 | deletion | NGO_44 | SNP array | SNP genotyping analysis | 1 | 101 |
| nssv14243921 | deletion | NGO_24 | SNP array | SNP genotyping analysis | 1 | 155 |
| nssv14244226 | deletion | SNI_15 | SNP array | SNP genotyping analysis | 1 | 132 |
| nssv14244371 | deletion | NGO_49 | SNP array | SNP genotyping analysis | 1 | 122 |
| nssv14244859 | deletion | SNI_10 | SNP array | SNP genotyping analysis | 1 | 125 |
| nssv14245339 | deletion | MLY_13 | SNP array | SNP genotyping analysis | 1 | 132 |
| nssv14245360 | deletion | MLY_2 | SNP array | SNP genotyping analysis | 1 | 128 |
| nssv14245765 | deletion | MLY_4 | SNP array | SNP genotyping analysis | 1 | 145 |
| nssv14247843 | deletion | NGO_39 | SNP array | SNP genotyping analysis | 1 | 117 |
| nssv14247911 | duplication | NGO_27 | SNP array | SNP genotyping analysis | 4 | 128 |
| nssv14247986 | deletion | MLY_17 | SNP array | SNP genotyping analysis | 1 | 113 |
| nssv14249022 | deletion | NGO_22 | SNP array | SNP genotyping analysis | 1 | 126 |
| nssv14249831 | deletion | SNI_2 | SNP array | SNP genotyping analysis | 1 | 109 |
| nssv14250031 | deletion | NGO_48 | SNP array | SNP genotyping analysis | 1 | 118 |
| nssv14250308 | deletion | NGO_42 | SNP array | SNP genotyping analysis | 1 | 116 |
| nssv14250915 | deletion | NGO_53 | SNP array | SNP genotyping analysis | 1 | 124 |
| nssv14251365 | deletion | NGO_7 | SNP array | SNP genotyping analysis | 0 | 134 |
| nssv14251662 | deletion | NGO_51 | SNP array | SNP genotyping analysis | 1 | 121 |
| nssv14251776 | deletion | NGO_2 | SNP array | SNP genotyping analysis | 1 | 125 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv14241218 | Remapped | Perfect | NC_000010.11:g.(54 920517_54923330)_( 54932839_54935658) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,920,517 | 54,923,330 | 54,932,839 | 54,935,658 |
| nssv14241298 | Remapped | Perfect | NC_000010.11:g.(54 920517_54923330)_( 54932839_54935658) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,920,517 | 54,923,330 | 54,932,839 | 54,935,658 |
| nssv14241354 | Remapped | Perfect | NC_000010.11:g.(54 920517_54923330)_( 54932839_54935658) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,920,517 | 54,923,330 | 54,932,839 | 54,935,658 |
| nssv14241403 | Remapped | Perfect | NC_000010.11:g.(54 920517_54923330)_( 54932839_54935658) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,920,517 | 54,923,330 | 54,932,839 | 54,935,658 |
| nssv14243577 | Remapped | Perfect | NC_000010.11:g.(54 920517_54923330)_( 54932839_54935658) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,920,517 | 54,923,330 | 54,932,839 | 54,935,658 |
| nssv14243805 | Remapped | Perfect | NC_000010.11:g.(54 920517_54923330)_( 54932839_54935658) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,920,517 | 54,923,330 | 54,932,839 | 54,935,658 |
| nssv14243921 | Remapped | Perfect | NC_000010.11:g.(54 920517_54923330)_( 54932839_54935658) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,920,517 | 54,923,330 | 54,932,839 | 54,935,658 |
| nssv14244226 | Remapped | Perfect | NC_000010.11:g.(54 920517_54923330)_( 54932839_54935658) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,920,517 | 54,923,330 | 54,932,839 | 54,935,658 |
| nssv14244371 | Remapped | Perfect | NC_000010.11:g.(54 920517_54923330)_( 54932839_54935658) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,920,517 | 54,923,330 | 54,932,839 | 54,935,658 |
| nssv14244859 | Remapped | Perfect | NC_000010.11:g.(54 920517_54923330)_( 54932839_54935658) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,920,517 | 54,923,330 | 54,932,839 | 54,935,658 |
| nssv14245339 | Remapped | Perfect | NC_000010.11:g.(54 920517_54923330)_( 54932839_54935658) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,920,517 | 54,923,330 | 54,932,839 | 54,935,658 |
| nssv14245360 | Remapped | Perfect | NC_000010.11:g.(54 920517_54923330)_( 54932839_54935658) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,920,517 | 54,923,330 | 54,932,839 | 54,935,658 |
| nssv14245765 | Remapped | Perfect | NC_000010.11:g.(54 920517_54923330)_( 54932839_54935658) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,920,517 | 54,923,330 | 54,932,839 | 54,935,658 |
| nssv14247843 | Remapped | Perfect | NC_000010.11:g.(54 920517_54923330)_( 54932839_54935658) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,920,517 | 54,923,330 | 54,932,839 | 54,935,658 |
| nssv14247911 | Remapped | Perfect | NC_000010.11:g.(54 920517_54923330)_( 54932839_54935658) dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,920,517 | 54,923,330 | 54,932,839 | 54,935,658 |
| nssv14247986 | Remapped | Perfect | NC_000010.11:g.(54 920517_54923330)_( 54932839_54935658) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,920,517 | 54,923,330 | 54,932,839 | 54,935,658 |
| nssv14249022 | Remapped | Perfect | NC_000010.11:g.(54 920517_54923330)_( 54932839_54935658) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,920,517 | 54,923,330 | 54,932,839 | 54,935,658 |
| nssv14249831 | Remapped | Perfect | NC_000010.11:g.(54 920517_54923330)_( 54932839_54935658) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,920,517 | 54,923,330 | 54,932,839 | 54,935,658 |
| nssv14250031 | Remapped | Perfect | NC_000010.11:g.(54 920517_54923330)_( 54932839_54935658) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,920,517 | 54,923,330 | 54,932,839 | 54,935,658 |
| nssv14250308 | Remapped | Perfect | NC_000010.11:g.(54 920517_54923330)_( 54932839_54935658) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,920,517 | 54,923,330 | 54,932,839 | 54,935,658 |
| nssv14250915 | Remapped | Perfect | NC_000010.11:g.(54 920517_54923330)_( 54932839_54935658) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,920,517 | 54,923,330 | 54,932,839 | 54,935,658 |
| nssv14251365 | Remapped | Perfect | NC_000010.11:g.(54 920517_54923330)_( 54932839_54935658) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,920,517 | 54,923,330 | 54,932,839 | 54,935,658 |
| nssv14251662 | Remapped | Perfect | NC_000010.11:g.(54 920517_54923330)_( 54932839_54935658) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,920,517 | 54,923,330 | 54,932,839 | 54,935,658 |
| nssv14251776 | Remapped | Perfect | NC_000010.11:g.(54 920517_54923330)_( 54932839_54935658) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,920,517 | 54,923,330 | 54,932,839 | 54,935,658 |
| nssv14241218 | Remapped | Perfect | NC_000010.10:g.(56 680277_56683090)_( 56692599_56695418) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,680,277 | 56,683,090 | 56,692,599 | 56,695,418 |
| nssv14241298 | Remapped | Perfect | NC_000010.10:g.(56 680277_56683090)_( 56692599_56695418) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,680,277 | 56,683,090 | 56,692,599 | 56,695,418 |
| nssv14241354 | Remapped | Perfect | NC_000010.10:g.(56 680277_56683090)_( 56692599_56695418) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,680,277 | 56,683,090 | 56,692,599 | 56,695,418 |
| nssv14241403 | Remapped | Perfect | NC_000010.10:g.(56 680277_56683090)_( 56692599_56695418) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,680,277 | 56,683,090 | 56,692,599 | 56,695,418 |
| nssv14243577 | Remapped | Perfect | NC_000010.10:g.(56 680277_56683090)_( 56692599_56695418) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,680,277 | 56,683,090 | 56,692,599 | 56,695,418 |
| nssv14243805 | Remapped | Perfect | NC_000010.10:g.(56 680277_56683090)_( 56692599_56695418) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,680,277 | 56,683,090 | 56,692,599 | 56,695,418 |
| nssv14243921 | Remapped | Perfect | NC_000010.10:g.(56 680277_56683090)_( 56692599_56695418) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,680,277 | 56,683,090 | 56,692,599 | 56,695,418 |
| nssv14244226 | Remapped | Perfect | NC_000010.10:g.(56 680277_56683090)_( 56692599_56695418) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,680,277 | 56,683,090 | 56,692,599 | 56,695,418 |
| nssv14244371 | Remapped | Perfect | NC_000010.10:g.(56 680277_56683090)_( 56692599_56695418) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,680,277 | 56,683,090 | 56,692,599 | 56,695,418 |
| nssv14244859 | Remapped | Perfect | NC_000010.10:g.(56 680277_56683090)_( 56692599_56695418) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,680,277 | 56,683,090 | 56,692,599 | 56,695,418 |
| nssv14245339 | Remapped | Perfect | NC_000010.10:g.(56 680277_56683090)_( 56692599_56695418) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,680,277 | 56,683,090 | 56,692,599 | 56,695,418 |
| nssv14245360 | Remapped | Perfect | NC_000010.10:g.(56 680277_56683090)_( 56692599_56695418) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,680,277 | 56,683,090 | 56,692,599 | 56,695,418 |
| nssv14245765 | Remapped | Perfect | NC_000010.10:g.(56 680277_56683090)_( 56692599_56695418) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,680,277 | 56,683,090 | 56,692,599 | 56,695,418 |
| nssv14247843 | Remapped | Perfect | NC_000010.10:g.(56 680277_56683090)_( 56692599_56695418) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,680,277 | 56,683,090 | 56,692,599 | 56,695,418 |
| nssv14247911 | Remapped | Perfect | NC_000010.10:g.(56 680277_56683090)_( 56692599_56695418) dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,680,277 | 56,683,090 | 56,692,599 | 56,695,418 |
| nssv14247986 | Remapped | Perfect | NC_000010.10:g.(56 680277_56683090)_( 56692599_56695418) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,680,277 | 56,683,090 | 56,692,599 | 56,695,418 |
| nssv14249022 | Remapped | Perfect | NC_000010.10:g.(56 680277_56683090)_( 56692599_56695418) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,680,277 | 56,683,090 | 56,692,599 | 56,695,418 |
| nssv14249831 | Remapped | Perfect | NC_000010.10:g.(56 680277_56683090)_( 56692599_56695418) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,680,277 | 56,683,090 | 56,692,599 | 56,695,418 |
| nssv14250031 | Remapped | Perfect | NC_000010.10:g.(56 680277_56683090)_( 56692599_56695418) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,680,277 | 56,683,090 | 56,692,599 | 56,695,418 |
| nssv14250308 | Remapped | Perfect | NC_000010.10:g.(56 680277_56683090)_( 56692599_56695418) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,680,277 | 56,683,090 | 56,692,599 | 56,695,418 |
| nssv14250915 | Remapped | Perfect | NC_000010.10:g.(56 680277_56683090)_( 56692599_56695418) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,680,277 | 56,683,090 | 56,692,599 | 56,695,418 |
| nssv14251365 | Remapped | Perfect | NC_000010.10:g.(56 680277_56683090)_( 56692599_56695418) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,680,277 | 56,683,090 | 56,692,599 | 56,695,418 |
| nssv14251662 | Remapped | Perfect | NC_000010.10:g.(56 680277_56683090)_( 56692599_56695418) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,680,277 | 56,683,090 | 56,692,599 | 56,695,418 |
| nssv14251776 | Remapped | Perfect | NC_000010.10:g.(56 680277_56683090)_( 56692599_56695418) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,680,277 | 56,683,090 | 56,692,599 | 56,695,418 |
| nssv14241218 | Submitted genomic | NC_000010.9:g.(563 50283_56353096)_(5 6362605_56365424)d el | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,350,283 | 56,353,096 | 56,362,605 | 56,365,424 | ||
| nssv14241298 | Submitted genomic | NC_000010.9:g.(563 50283_56353096)_(5 6362605_56365424)d el | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,350,283 | 56,353,096 | 56,362,605 | 56,365,424 | ||
| nssv14241354 | Submitted genomic | NC_000010.9:g.(563 50283_56353096)_(5 6362605_56365424)d el | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,350,283 | 56,353,096 | 56,362,605 | 56,365,424 | ||
| nssv14241403 | Submitted genomic | NC_000010.9:g.(563 50283_56353096)_(5 6362605_56365424)d el | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,350,283 | 56,353,096 | 56,362,605 | 56,365,424 | ||
| nssv14243577 | Submitted genomic | NC_000010.9:g.(563 50283_56353096)_(5 6362605_56365424)d el | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,350,283 | 56,353,096 | 56,362,605 | 56,365,424 | ||
| nssv14243805 | Submitted genomic | NC_000010.9:g.(563 50283_56353096)_(5 6362605_56365424)d el | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,350,283 | 56,353,096 | 56,362,605 | 56,365,424 | ||
| nssv14243921 | Submitted genomic | NC_000010.9:g.(563 50283_56353096)_(5 6362605_56365424)d el | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,350,283 | 56,353,096 | 56,362,605 | 56,365,424 | ||
| nssv14244226 | Submitted genomic | NC_000010.9:g.(563 50283_56353096)_(5 6362605_56365424)d el | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,350,283 | 56,353,096 | 56,362,605 | 56,365,424 | ||
| nssv14244371 | Submitted genomic | NC_000010.9:g.(563 50283_56353096)_(5 6362605_56365424)d el | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,350,283 | 56,353,096 | 56,362,605 | 56,365,424 | ||
| nssv14244859 | Submitted genomic | NC_000010.9:g.(563 50283_56353096)_(5 6362605_56365424)d el | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,350,283 | 56,353,096 | 56,362,605 | 56,365,424 | ||
| nssv14245339 | Submitted genomic | NC_000010.9:g.(563 50283_56353096)_(5 6362605_56365424)d el | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,350,283 | 56,353,096 | 56,362,605 | 56,365,424 | ||
| nssv14245360 | Submitted genomic | NC_000010.9:g.(563 50283_56353096)_(5 6362605_56365424)d el | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,350,283 | 56,353,096 | 56,362,605 | 56,365,424 | ||
| nssv14245765 | Submitted genomic | NC_000010.9:g.(563 50283_56353096)_(5 6362605_56365424)d el | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,350,283 | 56,353,096 | 56,362,605 | 56,365,424 | ||
| nssv14247843 | Submitted genomic | NC_000010.9:g.(563 50283_56353096)_(5 6362605_56365424)d el | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,350,283 | 56,353,096 | 56,362,605 | 56,365,424 | ||
| nssv14247911 | Submitted genomic | NC_000010.9:g.(563 50283_56353096)_(5 6362605_56365424)d up | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,350,283 | 56,353,096 | 56,362,605 | 56,365,424 | ||
| nssv14247986 | Submitted genomic | NC_000010.9:g.(563 50283_56353096)_(5 6362605_56365424)d el | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,350,283 | 56,353,096 | 56,362,605 | 56,365,424 | ||
| nssv14249022 | Submitted genomic | NC_000010.9:g.(563 50283_56353096)_(5 6362605_56365424)d el | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,350,283 | 56,353,096 | 56,362,605 | 56,365,424 | ||
| nssv14249831 | Submitted genomic | NC_000010.9:g.(563 50283_56353096)_(5 6362605_56365424)d el | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,350,283 | 56,353,096 | 56,362,605 | 56,365,424 | ||
| nssv14250031 | Submitted genomic | NC_000010.9:g.(563 50283_56353096)_(5 6362605_56365424)d el | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,350,283 | 56,353,096 | 56,362,605 | 56,365,424 | ||
| nssv14250308 | Submitted genomic | NC_000010.9:g.(563 50283_56353096)_(5 6362605_56365424)d el | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,350,283 | 56,353,096 | 56,362,605 | 56,365,424 | ||
| nssv14250915 | Submitted genomic | NC_000010.9:g.(563 50283_56353096)_(5 6362605_56365424)d el | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,350,283 | 56,353,096 | 56,362,605 | 56,365,424 | ||
| nssv14251365 | Submitted genomic | NC_000010.9:g.(563 50283_56353096)_(5 6362605_56365424)d el | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,350,283 | 56,353,096 | 56,362,605 | 56,365,424 | ||
| nssv14251662 | Submitted genomic | NC_000010.9:g.(563 50283_56353096)_(5 6362605_56365424)d el | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,350,283 | 56,353,096 | 56,362,605 | 56,365,424 | ||
| nssv14251776 | Submitted genomic | NC_000010.9:g.(563 50283_56353096)_(5 6362605_56365424)d el | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,350,283 | 56,353,096 | 56,362,605 | 56,365,424 |