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dbVar

Database of genomic structural variation

nsv3169453

Organism: Homo sapiens

Study:nstd156 (Fu et al. 2018)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:96,780

Publication(s):Fu et al. 2018

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1065 SVs from 81 studies. See in: genome view

Remapped(Score: Perfect):28,753,172-28,849,951

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv3169453	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000009.12	Chr9	28,753,172	28,756,346	28,849,506	28,849,951
nsv3169453	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000009.11	Chr9	28,753,170	28,756,344	28,849,504	28,849,949
nsv3169453	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000009.10	Chr9	28,743,170	28,746,344	28,839,504	28,839,949

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv14248603	deletion	SNI_1	SNP array	SNP genotyping analysis	1	115
nssv14241381	deletion	NGO_40	SNP array	SNP genotyping analysis	1	120
nssv14248383	deletion	SNI_4	SNP array	SNP genotyping analysis	1	134

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv14248603	Remapped	Perfect	NC_000009.12:g.(28 753172_28756346)_( 28841309_28847172) del	GRCh38.p12	First Pass	NC_000009.12	Chr9	28,753,172	28,756,346	28,841,309	28,847,172
nssv14241381	Remapped	Perfect	NC_000009.12:g.(28 753172_28756346)_( 28849506_28849951) del	GRCh38.p12	First Pass	NC_000009.12	Chr9	28,753,172	28,756,346	28,849,506	28,849,951
nssv14248383	Remapped	Perfect	NC_000009.12:g.(28 753172_28756346)_( 28849506_28849951) del	GRCh38.p12	First Pass	NC_000009.12	Chr9	28,753,172	28,756,346	28,849,506	28,849,951
nssv14248603	Remapped	Perfect	NC_000009.11:g.(28 753170_28756344)_( 28841307_28847170) del	GRCh37.p13	First Pass	NC_000009.11	Chr9	28,753,170	28,756,344	28,841,307	28,847,170
nssv14241381	Remapped	Perfect	NC_000009.11:g.(28 753170_28756344)_( 28849504_28849949) del	GRCh37.p13	First Pass	NC_000009.11	Chr9	28,753,170	28,756,344	28,849,504	28,849,949
nssv14248383	Remapped	Perfect	NC_000009.11:g.(28 753170_28756344)_( 28849504_28849949) del	GRCh37.p13	First Pass	NC_000009.11	Chr9	28,753,170	28,756,344	28,849,504	28,849,949
nssv14248603	Submitted genomic		NC_000009.10:g.(28 743170_28746344)_( 28831307_28837170) del	NCBI36 (hg18)		NC_000009.10	Chr9	28,743,170	28,746,344	28,831,307	28,837,170
nssv14241381	Submitted genomic		NC_000009.10:g.(28 743170_28746344)_( 28839504_28839949) del	NCBI36 (hg18)		NC_000009.10	Chr9	28,743,170	28,746,344	28,839,504	28,839,949
nssv14248383	Submitted genomic		NC_000009.10:g.(28 743170_28746344)_( 28839504_28839949) del	NCBI36 (hg18)		NC_000009.10	Chr9	28,743,170	28,746,344	28,839,504	28,839,949

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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