nsv2785570
- Organism: Homo sapiens
- Study:nstd132 (Walker et al. 2017)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:420,662
- Publication(s):Walker et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1462 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 1467 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 555 SVs from 25 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv2785570 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 53,577,081 | 53,997,742 |
| nsv2785570 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 55,336,841 | 55,757,502 |
| nsv2785570 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000010.9 | Chr10 | 55,006,847 | 55,427,508 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv13662142 | copy number loss | CGPQ-1903 | SNP array | Genotyping | 8 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv13662142 | Remapped | Perfect | NC_000010.11:g.(?_ 53577081)_(5399774 2_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 53,577,081 | 53,997,742 |
| nssv13662142 | Remapped | Perfect | NC_000010.10:g.(?_ 55336841)_(5575750 2_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 55,336,841 | 55,757,502 |
| nssv13662142 | Submitted genomic | NC_000010.9:g.(?_5 5006847)_(55427508 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 55,006,847 | 55,427,508 |