nsv164
- Organism: Homo sapiens
- Study:nstd1 (Tuzun et al. 2005)
- Variant Type:insertion
- Method Type:Sequencing
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:43,559
- Publication(s):Tuzun et al. 2005
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 238 SVs from 44 studies. See in: genome view
Overlapping variant regions from other studies: 68 SVs from 23 studies. See in: genome view
Overlapping variant regions from other studies: 67 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 238 SVs from 44 studies. See in: genome view
Overlapping variant regions from other studies: 12 SVs from 5 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv164 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000017.11 | Chr17 | 72,853,696 | 72,882,914 |
| nsv164 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NT_187616.1 | Chr17|NT_1 87616.1 | 20,363 | 55,934 |
| nsv164 | Remapped | Pass | GRCh38.p12 | PATCHES | Second Pass | NW_019805501.1 | Chr17|NW_0 19805501.1 | 20,366 | 63,924 |
| nsv164 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000017.10 | Chr17 | 70,849,835 | 70,879,053 |
| nsv164 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000017.9 | Chr17 | 68,361,430 | 68,390,648 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv164 | insertion | SAMN00000376 | Sequencing | Paired-end mapping | 297 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv164 | Remapped | Pass | NT_187616.1:g.(203 63_?)_(?_55934)ins 8940 | GRCh38.p12 | Second Pass | NT_187616.1 | Chr17|NT_1 87616.1 | 20,363 | 55,934 |
| nssv164 | Remapped | Pass | NW_019805501.1:g.( 20366_?)_(?_63924) ins8940 | GRCh38.p12 | Second Pass | NW_019805501.1 | Chr17|NW_0 19805501.1 | 20,366 | 63,924 |
| nssv164 | Remapped | Perfect | NC_000017.11:g.(72 853696_?)_(?_72882 914)ins8940 | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 72,853,696 | 72,882,914 |
| nssv164 | Remapped | Perfect | NC_000017.10:g.(70 849835_?)_(?_70879 053)ins8940 | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 70,849,835 | 70,879,053 |
| nssv164 | Submitted genomic | NC_000017.9:g.(683 61430_?)_(?_683906 48)ins8940 | NCBI35 (hg17) | NC_000017.9 | Chr17 | 68,361,430 | 68,390,648 |