nsv1494026
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:12
- Validation:Not tested
- Clinical Assertions: No
- Region Size:78
- Description:MOTIF=[TAGA],NS=[291],REF=[19.5],RL=[78],RPA=[
11.5,12.5,13.5,14.5,15.5,16.5,17.5,18.5,20.5,21.5,22.5],RU
=[TAGA],QUAL=[91706.5] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 146 SVs from 28 studies. See in: genome view
Overlapping variant regions from other studies: 146 SVs from 28 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1494026 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 63,940,466 | 63,940,543 |
| nsv1494026 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 64,406,137 | 64,406,214 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv8764628 | short tandem repeat | (TAGA) 16.5 | Sequencing | Genotyping |
| nssv8764629 | short tandem repeat | (TAGA) 12.5 | Sequencing | Genotyping |
| nssv8764630 | short tandem repeat | (TAGA) 11.5 | Sequencing | Genotyping |
| nssv8764631 | short tandem repeat | (TAGA) 14.5 | Sequencing | Genotyping |
| nssv8764632 | short tandem repeat | (TAGA) 15.5 | Sequencing | Genotyping |
| nssv8764633 | short tandem repeat | (TAGA) 17.5 | Sequencing | Genotyping |
| nssv8764634 | short tandem repeat | (TAGA) 21.5 | Sequencing | Genotyping |
| nssv8764635 | short tandem repeat | (TAGA) 18.5 | Sequencing | Genotyping |
| nssv8764636 | short tandem repeat | (TAGA) 20.5 | Sequencing | Genotyping |
| nssv8764637 | short tandem repeat | (TAGA) 13.5 | Sequencing | Genotyping |
| nssv8764638 | short tandem repeat | (TAGA) 22.5 | Sequencing | Genotyping |
| nssv8764639 | short tandem repeat | (TAGA) 19.5 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv8764628 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 63,940,466 | 63,940,543 |
| nssv8764629 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 63,940,466 | 63,940,543 |
| nssv8764630 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 63,940,466 | 63,940,543 |
| nssv8764631 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 63,940,466 | 63,940,543 |
| nssv8764632 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 63,940,466 | 63,940,543 |
| nssv8764633 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 63,940,466 | 63,940,543 |
| nssv8764634 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 63,940,466 | 63,940,543 |
| nssv8764635 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 63,940,466 | 63,940,543 |
| nssv8764636 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 63,940,466 | 63,940,543 |
| nssv8764637 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 63,940,466 | 63,940,543 |
| nssv8764638 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 63,940,466 | 63,940,543 |
| nssv8764639 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 63,940,466 | 63,940,543 |
| nssv8764628 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 64,406,137 | 64,406,214 | ||
| nssv8764629 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 64,406,137 | 64,406,214 | ||
| nssv8764630 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 64,406,137 | 64,406,214 | ||
| nssv8764631 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 64,406,137 | 64,406,214 | ||
| nssv8764632 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 64,406,137 | 64,406,214 | ||
| nssv8764633 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 64,406,137 | 64,406,214 | ||
| nssv8764634 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 64,406,137 | 64,406,214 | ||
| nssv8764635 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 64,406,137 | 64,406,214 | ||
| nssv8764636 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 64,406,137 | 64,406,214 | ||
| nssv8764637 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 64,406,137 | 64,406,214 | ||
| nssv8764638 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 64,406,137 | 64,406,214 | ||
| nssv8764639 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 64,406,137 | 64,406,214 |