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dbVar

Database of genomic structural variation

nsv1238

Organism: Homo sapiens

Study:nstd2 (Kidd et al. 2008)
Variant Type:insertion
Method Type:Sequencing
Submitted on:NCBI35 (hg17)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:63,719

Publication(s):Kidd et al. 2008

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 283 SVs from 47 studies. See in: genome view

Remapped(Score: Perfect):34,748,141-34,811,859

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nsv1238	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000014.9	Chr14	34,748,141	34,811,859
nsv1238	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000014.8	Chr14	35,217,347	35,281,065
nsv1238	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000014.7	Chr14	34,287,098	34,350,816

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv4106	insertion	NA12878	Sequencing	Paired-end mapping	1,451
nssv2917	insertion	NA18555	Sequencing	Paired-end mapping	1,472

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nssv4106	Remapped	Perfect	NC_000014.9:g.(347 48141_?)_(?_347801 69)ins5014	GRCh38.p12	First Pass	NC_000014.9	Chr14	34,748,141	34,780,169
nssv2917	Remapped	Perfect	NC_000014.9:g.(347 78394_?)_(?_348118 59)ins6558	GRCh38.p12	First Pass	NC_000014.9	Chr14	34,778,394	34,811,859
nssv4106	Remapped	Perfect	NC_000014.8:g.(352 17347_?)_(?_352493 75)ins5014	GRCh37.p13	First Pass	NC_000014.8	Chr14	35,217,347	35,249,375
nssv2917	Remapped	Perfect	NC_000014.8:g.(352 47600_?)_(?_352810 65)ins6558	GRCh37.p13	First Pass	NC_000014.8	Chr14	35,247,600	35,281,065
nssv4106	Submitted genomic		NC_000014.7:g.(342 87098_?)_(?_343191 26)ins5014	NCBI35 (hg17)		NC_000014.7	Chr14	34,287,098	34,319,126
nssv2917	Submitted genomic		NC_000014.7:g.(343 17351_?)_(?_343508 16)ins6558	NCBI35 (hg17)		NC_000014.7	Chr14	34,317,351	34,350,816

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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