nsv1196713
- Organism: Homo sapiens
- Study:nstd113 (Polyak et al. 2015)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:4
- Validation:Not tested
- Clinical Assertions: No
- Region Size:97,197
- Publication(s):Polyak et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1395 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 1395 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 514 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1196713 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 4,092,539 | 4,189,735 |
| nsv1196713 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 4,134,223 | 4,231,419 |
| nsv1196713 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 4,109,223 | 4,206,419 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv7460931 | copy number loss | 22438 | Oligo aCGH | Probe signal intensity | nssv7460398, nssv7470527 |
| nssv7464573 | copy number loss | 14980 | Oligo aCGH | Probe signal intensity | nssv7461716, nssv7466566 |
| nssv7468958 | copy number loss | 27835 | Oligo aCGH | Probe signal intensity | nssv7462875, nssv7469903 |
| nssv7472937 | copy number loss | 18219 | Oligo aCGH | Probe signal intensity | nssv7459210, nssv7470463 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv7460931 | Remapped | Perfect | NC_000003.12:g.(?_ 4092539)_(4189735_ ?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 4,092,539 | 4,189,735 |
| nssv7464573 | Remapped | Perfect | NC_000003.12:g.(?_ 4092539)_(4189735_ ?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 4,092,539 | 4,189,735 |
| nssv7468958 | Remapped | Perfect | NC_000003.12:g.(?_ 4092539)_(4189735_ ?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 4,092,539 | 4,189,735 |
| nssv7472937 | Remapped | Perfect | NC_000003.12:g.(?_ 4092539)_(4189735_ ?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 4,092,539 | 4,189,735 |
| nssv7460931 | Remapped | Perfect | NC_000003.11:g.(?_ 4134223)_(4231419_ ?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 4,134,223 | 4,231,419 |
| nssv7464573 | Remapped | Perfect | NC_000003.11:g.(?_ 4134223)_(4231419_ ?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 4,134,223 | 4,231,419 |
| nssv7468958 | Remapped | Perfect | NC_000003.11:g.(?_ 4134223)_(4231419_ ?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 4,134,223 | 4,231,419 |
| nssv7472937 | Remapped | Perfect | NC_000003.11:g.(?_ 4134223)_(4231419_ ?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 4,134,223 | 4,231,419 |
| nssv7460931 | Submitted genomic | NC_000003.10:g.(?_ 4109223)_(4206419_ ?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 4,109,223 | 4,206,419 | ||
| nssv7464573 | Submitted genomic | NC_000003.10:g.(?_ 4109223)_(4206419_ ?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 4,109,223 | 4,206,419 | ||
| nssv7468958 | Submitted genomic | NC_000003.10:g.(?_ 4109223)_(4206419_ ?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 4,109,223 | 4,206,419 | ||
| nssv7472937 | Submitted genomic | NC_000003.10:g.(?_ 4109223)_(4206419_ ?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 4,109,223 | 4,206,419 |