nsv1196689
- Organism: Homo sapiens
- Study:nstd113 (Polyak et al. 2015)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:16,022,426
- Publication(s):Polyak et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 41561 SVs from 136 studies. See in: genome view
Overlapping variant regions from other studies: 41590 SVs from 136 studies. See in: genome view
Overlapping variant regions from other studies: 11820 SVs from 42 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1196689 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 86,987,456 | 103,009,881 |
| nsv1196689 | Remapped | Good | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 87,908,608 | 103,931,038 |
| nsv1196689 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 88,127,632 | 104,150,487 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv7467804 | copy number loss | 19281 | Oligo aCGH | Probe signal intensity | nssv7459504, nssv7462905 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv7467804 | Remapped | Good | NC_000004.12:g.(?_ 86987456)_(1030098 81_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 86,987,456 | 103,009,881 |
| nssv7467804 | Remapped | Good | NC_000004.11:g.(?_ 87908608)_(1039310 38_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 87,908,608 | 103,931,038 |
| nssv7467804 | Submitted genomic | NC_000004.10:g.(?_ 88127632)_(1041504 87_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 88,127,632 | 104,150,487 |