nsv1196639
- Organism: Homo sapiens
- Study:nstd113 (Polyak et al. 2015)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:767,264
- Publication(s):Polyak et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1880 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 1881 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 489 SVs from 24 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1196639 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 73,641,442 | 74,408,705 |
| nsv1196639 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 74,107,125 | 74,874,389 |
| nsv1196639 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000001.9 | Chr1 | 73,879,713 | 74,646,977 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv7467762 | copy number loss | 30176 | Oligo aCGH | Probe signal intensity | nssv7459777 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv7467762 | Remapped | Perfect | NC_000001.11:g.(?_ 73641442)_(7440870 5_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 73,641,442 | 74,408,705 |
| nssv7467762 | Remapped | Perfect | NC_000001.10:g.(?_ 74107125)_(7487438 9_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 74,107,125 | 74,874,389 |
| nssv7467762 | Submitted genomic | NC_000001.9:g.(?_7 3879713)_(74646977 _?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 73,879,713 | 74,646,977 |