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dbVar

Database of genomic structural variation

nsv1196320

Organism: Homo sapiens

Study:nstd113 (Polyak et al. 2015)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:NCBI36 (hg18)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:216,173

Publication(s):Polyak et al. 2015

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 705 SVs from 67 studies. See in: genome view

Remapped(Score: Perfect):4,257,156-4,473,328

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv1196320	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000006.12	Chr6	4,257,156	4,473,328
nsv1196320	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000006.11	Chr6	4,257,390	4,473,562
nsv1196320	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000006.10	Chr6	4,202,389	4,418,561

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv7461165	copy number loss	18550	Oligo aCGH	Probe signal intensity	nssv7463689
nssv7463732	copy number loss	18465	Oligo aCGH	Probe signal intensity	nssv7460045, nssv7472293, nssv7461348
nssv7464187	copy number loss	31177	Oligo aCGH	Probe signal intensity	nssv7465866
nssv7465961	copy number loss	31979	Oligo aCGH	Probe signal intensity	7
nssv7467725	copy number loss	29172	Oligo aCGH	Probe signal intensity	nssv7470438

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv7461165	Remapped	Perfect	NC_000006.12:g.(?_ 4257156)_(4473328_ ?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	4,257,156	4,473,328
nssv7463732	Remapped	Perfect	NC_000006.12:g.(?_ 4257156)_(4473328_ ?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	4,257,156	4,473,328
nssv7464187	Remapped	Perfect	NC_000006.12:g.(?_ 4257156)_(4473328_ ?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	4,257,156	4,473,328
nssv7465961	Remapped	Perfect	NC_000006.12:g.(?_ 4257156)_(4473328_ ?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	4,257,156	4,473,328
nssv7467725	Remapped	Perfect	NC_000006.12:g.(?_ 4257156)_(4473328_ ?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	4,257,156	4,473,328
nssv7461165	Remapped	Perfect	NC_000006.11:g.(?_ 4257390)_(4473562_ ?)del	GRCh37.p13	First Pass	NC_000006.11	Chr6	4,257,390	4,473,562
nssv7463732	Remapped	Perfect	NC_000006.11:g.(?_ 4257390)_(4473562_ ?)del	GRCh37.p13	First Pass	NC_000006.11	Chr6	4,257,390	4,473,562
nssv7464187	Remapped	Perfect	NC_000006.11:g.(?_ 4257390)_(4473562_ ?)del	GRCh37.p13	First Pass	NC_000006.11	Chr6	4,257,390	4,473,562
nssv7465961	Remapped	Perfect	NC_000006.11:g.(?_ 4257390)_(4473562_ ?)del	GRCh37.p13	First Pass	NC_000006.11	Chr6	4,257,390	4,473,562
nssv7467725	Remapped	Perfect	NC_000006.11:g.(?_ 4257390)_(4473562_ ?)del	GRCh37.p13	First Pass	NC_000006.11	Chr6	4,257,390	4,473,562
nssv7461165	Submitted genomic		NC_000006.10:g.(?_ 4202389)_(4418561_ ?)del	NCBI36 (hg18)		NC_000006.10	Chr6	4,202,389	4,418,561
nssv7463732	Submitted genomic		NC_000006.10:g.(?_ 4202389)_(4418561_ ?)del	NCBI36 (hg18)		NC_000006.10	Chr6	4,202,389	4,418,561
nssv7464187	Submitted genomic		NC_000006.10:g.(?_ 4202389)_(4418561_ ?)del	NCBI36 (hg18)		NC_000006.10	Chr6	4,202,389	4,418,561
nssv7465961	Submitted genomic		NC_000006.10:g.(?_ 4202389)_(4418561_ ?)del	NCBI36 (hg18)		NC_000006.10	Chr6	4,202,389	4,418,561
nssv7467725	Submitted genomic		NC_000006.10:g.(?_ 4202389)_(4418561_ ?)del	NCBI36 (hg18)		NC_000006.10	Chr6	4,202,389	4,418,561

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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