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dbVar

Database of genomic structural variation

nsv1194190

Organism: Homo sapiens

Study:nstd113 (Polyak et al. 2015)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:NCBI36 (hg18)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:73,589

Publication(s):Polyak et al. 2015

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 260 SVs from 51 studies. See in: genome view

Remapped(Score: Perfect):106,235,552-106,309,140

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv1194190	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000007.14	Chr7	106,235,552	106,309,140
nsv1194190	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000007.13	Chr7	105,875,998	105,949,586
nsv1194190	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000007.12	Chr7	105,663,234	105,736,822

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv7461685	copy number loss	26768	Oligo aCGH	Probe signal intensity	nssv7467353, nssv7473739
nssv7466181	copy number loss	19688	Oligo aCGH	Probe signal intensity	nssv7460918
nssv7468777	copy number loss	13214	Oligo aCGH	Probe signal intensity	nssv7463112, nssv7469782, nssv7460495
nssv7473467	copy number loss	30765	Oligo aCGH	Probe signal intensity	nssv7472192, nssv7473637, nssv7461463
nssv7474945	copy number loss	31961	Oligo aCGH	Probe signal intensity	nssv7460177

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv7461685	Remapped	Perfect	NC_000007.14:g.(?_ 106235552)_(106309 140_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	106,235,552	106,309,140
nssv7466181	Remapped	Perfect	NC_000007.14:g.(?_ 106235552)_(106309 140_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	106,235,552	106,309,140
nssv7468777	Remapped	Perfect	NC_000007.14:g.(?_ 106235552)_(106309 140_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	106,235,552	106,309,140
nssv7473467	Remapped	Perfect	NC_000007.14:g.(?_ 106235552)_(106309 140_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	106,235,552	106,309,140
nssv7474945	Remapped	Perfect	NC_000007.14:g.(?_ 106235552)_(106309 140_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	106,235,552	106,309,140
nssv7461685	Remapped	Perfect	NC_000007.13:g.(?_ 105875998)_(105949 586_?)del	GRCh37.p13	First Pass	NC_000007.13	Chr7	105,875,998	105,949,586
nssv7466181	Remapped	Perfect	NC_000007.13:g.(?_ 105875998)_(105949 586_?)del	GRCh37.p13	First Pass	NC_000007.13	Chr7	105,875,998	105,949,586
nssv7468777	Remapped	Perfect	NC_000007.13:g.(?_ 105875998)_(105949 586_?)del	GRCh37.p13	First Pass	NC_000007.13	Chr7	105,875,998	105,949,586
nssv7473467	Remapped	Perfect	NC_000007.13:g.(?_ 105875998)_(105949 586_?)del	GRCh37.p13	First Pass	NC_000007.13	Chr7	105,875,998	105,949,586
nssv7474945	Remapped	Perfect	NC_000007.13:g.(?_ 105875998)_(105949 586_?)del	GRCh37.p13	First Pass	NC_000007.13	Chr7	105,875,998	105,949,586
nssv7461685	Submitted genomic		NC_000007.12:g.(?_ 105663234)_(105736 822_?)del	NCBI36 (hg18)		NC_000007.12	Chr7	105,663,234	105,736,822
nssv7466181	Submitted genomic		NC_000007.12:g.(?_ 105663234)_(105736 822_?)del	NCBI36 (hg18)		NC_000007.12	Chr7	105,663,234	105,736,822
nssv7468777	Submitted genomic		NC_000007.12:g.(?_ 105663234)_(105736 822_?)del	NCBI36 (hg18)		NC_000007.12	Chr7	105,663,234	105,736,822
nssv7473467	Submitted genomic		NC_000007.12:g.(?_ 105663234)_(105736 822_?)del	NCBI36 (hg18)		NC_000007.12	Chr7	105,663,234	105,736,822
nssv7474945	Submitted genomic		NC_000007.12:g.(?_ 105663234)_(105736 822_?)del	NCBI36 (hg18)		NC_000007.12	Chr7	105,663,234	105,736,822

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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