nsv1193864
- Organism: Homo sapiens
- Study:nstd113 (Polyak et al. 2015)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:5
- Validation:Not tested
- Clinical Assertions: No
- Region Size:51,350
- Publication(s):Polyak et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 536 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 536 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 199 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1193864 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000017.11 | Chr17 | 3,603,751 | 3,655,100 |
| nsv1193864 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000017.10 | Chr17 | 3,507,045 | 3,558,394 |
| nsv1193864 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000017.9 | Chr17 | 3,453,794 | 3,505,143 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv7463057 | copy number loss | 18940 | Oligo aCGH | Probe signal intensity | nssv7462083, nssv7466896, nssv7470315 |
| nssv7464686 | copy number loss | 23342 | Oligo aCGH | Probe signal intensity | nssv7468831, nssv7465660, nssv7475360 |
| nssv7469445 | copy number loss | 23321 | Oligo aCGH | Probe signal intensity | nssv7467102, nssv7460015 |
| nssv7470818 | copy number loss | 19561 | Oligo aCGH | Probe signal intensity | nssv7472286, nssv7472119, nssv7475638 |
| nssv7472855 | copy number loss | 8541 | Oligo aCGH | Probe signal intensity | nssv7469202, nssv7466081 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv7463057 | Remapped | Perfect | NC_000017.11:g.(?_ 3603751)_(3655100_ ?)del | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 3,603,751 | 3,655,100 |
| nssv7464686 | Remapped | Perfect | NC_000017.11:g.(?_ 3603751)_(3655100_ ?)del | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 3,603,751 | 3,655,100 |
| nssv7469445 | Remapped | Perfect | NC_000017.11:g.(?_ 3603751)_(3655100_ ?)del | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 3,603,751 | 3,655,100 |
| nssv7470818 | Remapped | Perfect | NC_000017.11:g.(?_ 3603751)_(3655100_ ?)del | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 3,603,751 | 3,655,100 |
| nssv7472855 | Remapped | Perfect | NC_000017.11:g.(?_ 3603751)_(3655100_ ?)del | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 3,603,751 | 3,655,100 |
| nssv7463057 | Remapped | Perfect | NC_000017.10:g.(?_ 3507045)_(3558394_ ?)del | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 3,507,045 | 3,558,394 |
| nssv7464686 | Remapped | Perfect | NC_000017.10:g.(?_ 3507045)_(3558394_ ?)del | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 3,507,045 | 3,558,394 |
| nssv7469445 | Remapped | Perfect | NC_000017.10:g.(?_ 3507045)_(3558394_ ?)del | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 3,507,045 | 3,558,394 |
| nssv7470818 | Remapped | Perfect | NC_000017.10:g.(?_ 3507045)_(3558394_ ?)del | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 3,507,045 | 3,558,394 |
| nssv7472855 | Remapped | Perfect | NC_000017.10:g.(?_ 3507045)_(3558394_ ?)del | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 3,507,045 | 3,558,394 |
| nssv7463057 | Submitted genomic | NC_000017.9:g.(?_3 453794)_(3505143_? )del | NCBI36 (hg18) | NC_000017.9 | Chr17 | 3,453,794 | 3,505,143 | ||
| nssv7464686 | Submitted genomic | NC_000017.9:g.(?_3 453794)_(3505143_? )del | NCBI36 (hg18) | NC_000017.9 | Chr17 | 3,453,794 | 3,505,143 | ||
| nssv7469445 | Submitted genomic | NC_000017.9:g.(?_3 453794)_(3505143_? )del | NCBI36 (hg18) | NC_000017.9 | Chr17 | 3,453,794 | 3,505,143 | ||
| nssv7470818 | Submitted genomic | NC_000017.9:g.(?_3 453794)_(3505143_? )del | NCBI36 (hg18) | NC_000017.9 | Chr17 | 3,453,794 | 3,505,143 | ||
| nssv7472855 | Submitted genomic | NC_000017.9:g.(?_3 453794)_(3505143_? )del | NCBI36 (hg18) | NC_000017.9 | Chr17 | 3,453,794 | 3,505,143 |