nsv1193167
- Organism: Homo sapiens
- Study:nstd113 (Polyak et al. 2015)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:6
- Validation:Not tested
- Clinical Assertions: No
- Region Size:430,626
- Publication(s):Polyak et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1379 SVs from 87 studies. See in: genome view
Overlapping variant regions from other studies: 834 SVs from 58 studies. See in: genome view
Overlapping variant regions from other studies: 1379 SVs from 87 studies. See in: genome view
Overlapping variant regions from other studies: 323 SVs from 24 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1193167 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 21,988,647 | 22,419,272 |
| nsv1193167 | Remapped | Perfect | GRCh38.p12 | PATCHES | Second Pass | NW_017852933.1 | Chr16|NW_0 17852933.1 | 685,767 | 1,116,390 |
| nsv1193167 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000016.9 | Chr16 | 21,999,968 | 22,430,593 |
| nsv1193167 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000016.8 | Chr16 | 21,907,469 | 22,338,094 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv7468861 | copy number loss | 19480 | Oligo aCGH | Probe signal intensity | nssv7466326 |
| nssv7469594 | copy number loss | 32184 | Oligo aCGH | Probe signal intensity | nssv7459523, nssv7463599 |
| nssv7471009 | copy number loss | 16699 | Oligo aCGH | Probe signal intensity | nssv7459304, nssv7472388 |
| nssv7471870 | copy number loss | 30775 | Oligo aCGH | Probe signal intensity | nssv7460426, nssv7469556 |
| nssv7473283 | copy number loss | 25774 | Oligo aCGH | Probe signal intensity | nssv7461010, nssv7466768 |
| nssv7473539 | copy number loss | 26463 | Oligo aCGH | Probe signal intensity | 6 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv7468861 | Remapped | Perfect | NW_017852933.1:g.( ?_685767)_(1116390 _?)del | GRCh38.p12 | Second Pass | NW_017852933.1 | Chr16|NW_0 17852933.1 | 685,767 | 1,116,390 |
| nssv7469594 | Remapped | Perfect | NW_017852933.1:g.( ?_685767)_(1116390 _?)del | GRCh38.p12 | Second Pass | NW_017852933.1 | Chr16|NW_0 17852933.1 | 685,767 | 1,116,390 |
| nssv7471009 | Remapped | Perfect | NW_017852933.1:g.( ?_685767)_(1116390 _?)del | GRCh38.p12 | Second Pass | NW_017852933.1 | Chr16|NW_0 17852933.1 | 685,767 | 1,116,390 |
| nssv7471870 | Remapped | Perfect | NW_017852933.1:g.( ?_685767)_(1116390 _?)del | GRCh38.p12 | Second Pass | NW_017852933.1 | Chr16|NW_0 17852933.1 | 685,767 | 1,116,390 |
| nssv7473283 | Remapped | Perfect | NW_017852933.1:g.( ?_685767)_(1116390 _?)del | GRCh38.p12 | Second Pass | NW_017852933.1 | Chr16|NW_0 17852933.1 | 685,767 | 1,116,390 |
| nssv7473539 | Remapped | Perfect | NW_017852933.1:g.( ?_685767)_(1116390 _?)del | GRCh38.p12 | Second Pass | NW_017852933.1 | Chr16|NW_0 17852933.1 | 685,767 | 1,116,390 |
| nssv7468861 | Remapped | Perfect | NC_000016.10:g.(?_ 21988647)_(2241927 2_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 21,988,647 | 22,419,272 |
| nssv7469594 | Remapped | Perfect | NC_000016.10:g.(?_ 21988647)_(2241927 2_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 21,988,647 | 22,419,272 |
| nssv7471009 | Remapped | Perfect | NC_000016.10:g.(?_ 21988647)_(2241927 2_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 21,988,647 | 22,419,272 |
| nssv7471870 | Remapped | Perfect | NC_000016.10:g.(?_ 21988647)_(2241927 2_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 21,988,647 | 22,419,272 |
| nssv7473283 | Remapped | Perfect | NC_000016.10:g.(?_ 21988647)_(2241927 2_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 21,988,647 | 22,419,272 |
| nssv7473539 | Remapped | Perfect | NC_000016.10:g.(?_ 21988647)_(2241927 2_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 21,988,647 | 22,419,272 |
| nssv7468861 | Remapped | Perfect | NC_000016.9:g.(?_2 1999968)_(22430593 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 21,999,968 | 22,430,593 |
| nssv7469594 | Remapped | Perfect | NC_000016.9:g.(?_2 1999968)_(22430593 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 21,999,968 | 22,430,593 |
| nssv7471009 | Remapped | Perfect | NC_000016.9:g.(?_2 1999968)_(22430593 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 21,999,968 | 22,430,593 |
| nssv7471870 | Remapped | Perfect | NC_000016.9:g.(?_2 1999968)_(22430593 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 21,999,968 | 22,430,593 |
| nssv7473283 | Remapped | Perfect | NC_000016.9:g.(?_2 1999968)_(22430593 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 21,999,968 | 22,430,593 |
| nssv7473539 | Remapped | Perfect | NC_000016.9:g.(?_2 1999968)_(22430593 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 21,999,968 | 22,430,593 |
| nssv7468861 | Submitted genomic | NC_000016.8:g.(?_2 1907469)_(22338094 _?)del | NCBI36 (hg18) | NC_000016.8 | Chr16 | 21,907,469 | 22,338,094 | ||
| nssv7469594 | Submitted genomic | NC_000016.8:g.(?_2 1907469)_(22338094 _?)del | NCBI36 (hg18) | NC_000016.8 | Chr16 | 21,907,469 | 22,338,094 | ||
| nssv7471009 | Submitted genomic | NC_000016.8:g.(?_2 1907469)_(22338094 _?)del | NCBI36 (hg18) | NC_000016.8 | Chr16 | 21,907,469 | 22,338,094 | ||
| nssv7471870 | Submitted genomic | NC_000016.8:g.(?_2 1907469)_(22338094 _?)del | NCBI36 (hg18) | NC_000016.8 | Chr16 | 21,907,469 | 22,338,094 | ||
| nssv7473283 | Submitted genomic | NC_000016.8:g.(?_2 1907469)_(22338094 _?)del | NCBI36 (hg18) | NC_000016.8 | Chr16 | 21,907,469 | 22,338,094 | ||
| nssv7473539 | Submitted genomic | NC_000016.8:g.(?_2 1907469)_(22338094 _?)del | NCBI36 (hg18) | NC_000016.8 | Chr16 | 21,907,469 | 22,338,094 |