nsv1191285
- Organism: Homo sapiens
- Study:nstd113 (Polyak et al. 2015)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:269,865
- Publication(s):Polyak et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1096 SVs from 82 studies. See in: genome view
Overlapping variant regions from other studies: 1100 SVs from 82 studies. See in: genome view
Overlapping variant regions from other studies: 412 SVs from 22 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1191285 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 7,887,727 | 8,157,591 |
| nsv1191285 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 7,887,727 | 8,157,591 |
| nsv1191285 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 7,877,727 | 8,147,591 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv7463556 | copy number loss | 15620 | Oligo aCGH | Probe signal intensity | nssv7459131, nssv7464057 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv7463556 | Remapped | Perfect | NC_000009.12:g.(?_ 7887727)_(8157591_ ?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 7,887,727 | 8,157,591 |
| nssv7463556 | Remapped | Perfect | NC_000009.11:g.(?_ 7887727)_(8157591_ ?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 7,887,727 | 8,157,591 |
| nssv7463556 | Submitted genomic | NC_000009.10:g.(?_ 7877727)_(8147591_ ?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 7,877,727 | 8,147,591 |