nsv1190161
- Organism: Homo sapiens
- Study:nstd113 (Polyak et al. 2015)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:8
- Validation:Not tested
- Clinical Assertions: No
- Region Size:261,329
- Publication(s):Polyak et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 912 SVs from 70 studies. See in: genome view
Overlapping variant regions from other studies: 912 SVs from 70 studies. See in: genome view
Overlapping variant regions from other studies: 267 SVs from 22 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1190161 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 142,103,747 | 142,365,075 |
| nsv1190161 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 141,822,589 | 142,083,917 |
| nsv1190161 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 143,305,279 | 143,566,607 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv7462357 | copy number gain | 29030 | Oligo aCGH | Probe signal intensity | 6 |
| nssv7462698 | copy number gain | 29161 | Oligo aCGH | Probe signal intensity | nssv7460318, nssv7474199 |
| nssv7466824 | copy number gain | 30978 | Oligo aCGH | Probe signal intensity | nssv7460160 |
| nssv7470168 | copy number gain | 27985 | Oligo aCGH | Probe signal intensity | nssv7474056, nssv7463767 |
| nssv7471207 | copy number gain | 19169 | Oligo aCGH | Probe signal intensity | nssv7459123 |
| nssv7472978 | copy number gain | 16020 | Oligo aCGH | Probe signal intensity | nssv7471632, nssv7461577 |
| nssv7474272 | copy number gain | 21269 | Oligo aCGH | Probe signal intensity | nssv7471664, nssv7471889 |
| nssv7474844 | copy number gain | 31311 | Oligo aCGH | Probe signal intensity | nssv7463154, nssv7475433, nssv7467218 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv7462357 | Remapped | Perfect | NC_000003.12:g.(?_ 142103747)_(142365 075_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 142,103,747 | 142,365,075 |
| nssv7462698 | Remapped | Perfect | NC_000003.12:g.(?_ 142103747)_(142365 075_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 142,103,747 | 142,365,075 |
| nssv7466824 | Remapped | Perfect | NC_000003.12:g.(?_ 142103747)_(142365 075_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 142,103,747 | 142,365,075 |
| nssv7470168 | Remapped | Perfect | NC_000003.12:g.(?_ 142103747)_(142365 075_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 142,103,747 | 142,365,075 |
| nssv7471207 | Remapped | Perfect | NC_000003.12:g.(?_ 142103747)_(142365 075_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 142,103,747 | 142,365,075 |
| nssv7472978 | Remapped | Perfect | NC_000003.12:g.(?_ 142103747)_(142365 075_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 142,103,747 | 142,365,075 |
| nssv7474272 | Remapped | Perfect | NC_000003.12:g.(?_ 142103747)_(142365 075_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 142,103,747 | 142,365,075 |
| nssv7474844 | Remapped | Perfect | NC_000003.12:g.(?_ 142103747)_(142365 075_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 142,103,747 | 142,365,075 |
| nssv7462357 | Remapped | Perfect | NC_000003.11:g.(?_ 141822589)_(142083 917_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 141,822,589 | 142,083,917 |
| nssv7462698 | Remapped | Perfect | NC_000003.11:g.(?_ 141822589)_(142083 917_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 141,822,589 | 142,083,917 |
| nssv7466824 | Remapped | Perfect | NC_000003.11:g.(?_ 141822589)_(142083 917_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 141,822,589 | 142,083,917 |
| nssv7470168 | Remapped | Perfect | NC_000003.11:g.(?_ 141822589)_(142083 917_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 141,822,589 | 142,083,917 |
| nssv7471207 | Remapped | Perfect | NC_000003.11:g.(?_ 141822589)_(142083 917_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 141,822,589 | 142,083,917 |
| nssv7472978 | Remapped | Perfect | NC_000003.11:g.(?_ 141822589)_(142083 917_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 141,822,589 | 142,083,917 |
| nssv7474272 | Remapped | Perfect | NC_000003.11:g.(?_ 141822589)_(142083 917_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 141,822,589 | 142,083,917 |
| nssv7474844 | Remapped | Perfect | NC_000003.11:g.(?_ 141822589)_(142083 917_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 141,822,589 | 142,083,917 |
| nssv7462357 | Submitted genomic | NC_000003.10:g.(?_ 143305279)_(143566 607_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 143,305,279 | 143,566,607 | ||
| nssv7462698 | Submitted genomic | NC_000003.10:g.(?_ 143305279)_(143566 607_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 143,305,279 | 143,566,607 | ||
| nssv7466824 | Submitted genomic | NC_000003.10:g.(?_ 143305279)_(143566 607_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 143,305,279 | 143,566,607 | ||
| nssv7470168 | Submitted genomic | NC_000003.10:g.(?_ 143305279)_(143566 607_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 143,305,279 | 143,566,607 | ||
| nssv7471207 | Submitted genomic | NC_000003.10:g.(?_ 143305279)_(143566 607_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 143,305,279 | 143,566,607 | ||
| nssv7472978 | Submitted genomic | NC_000003.10:g.(?_ 143305279)_(143566 607_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 143,305,279 | 143,566,607 | ||
| nssv7474272 | Submitted genomic | NC_000003.10:g.(?_ 143305279)_(143566 607_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 143,305,279 | 143,566,607 | ||
| nssv7474844 | Submitted genomic | NC_000003.10:g.(?_ 143305279)_(143566 607_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 143,305,279 | 143,566,607 |