nsv1189525
- Organism: Homo sapiens
- Study:nstd113 (Polyak et al. 2015)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:7
- Validation:Not tested
- Clinical Assertions: No
- Region Size:56,196
- Publication(s):Polyak et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 234 SVs from 48 studies. See in: genome view
Overlapping variant regions from other studies: 234 SVs from 48 studies. See in: genome view
Overlapping variant regions from other studies: 74 SVs from 18 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1189525 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 106,252,945 | 106,309,140 |
| nsv1189525 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000007.13 | Chr7 | 105,893,391 | 105,949,586 |
| nsv1189525 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000007.12 | Chr7 | 105,680,627 | 105,736,822 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv7461776 | copy number loss | 29900 | Oligo aCGH | Probe signal intensity | nssv7468507, nssv7462660, nssv7468076 |
| nssv7463649 | copy number loss | 32001 | Oligo aCGH | Probe signal intensity | 5 |
| nssv7464928 | copy number loss | 31308 | Oligo aCGH | Probe signal intensity | nssv7468013, nssv7460892 |
| nssv7466227 | copy number loss | 30257 | Oligo aCGH | Probe signal intensity | nssv7463104, nssv7463509 |
| nssv7471168 | copy number loss | 31832 | Oligo aCGH | Probe signal intensity | nssv7466740, nssv7464562 |
| nssv7474347 | copy number loss | 32232 | Oligo aCGH | Probe signal intensity | nssv7462450 |
| nssv7475206 | copy number loss | 29273 | Oligo aCGH | Probe signal intensity | nssv7459358 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv7461776 | Remapped | Perfect | NC_000007.14:g.(?_ 106252945)_(106309 140_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 106,252,945 | 106,309,140 |
| nssv7463649 | Remapped | Perfect | NC_000007.14:g.(?_ 106252945)_(106309 140_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 106,252,945 | 106,309,140 |
| nssv7464928 | Remapped | Perfect | NC_000007.14:g.(?_ 106252945)_(106309 140_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 106,252,945 | 106,309,140 |
| nssv7466227 | Remapped | Perfect | NC_000007.14:g.(?_ 106252945)_(106309 140_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 106,252,945 | 106,309,140 |
| nssv7471168 | Remapped | Perfect | NC_000007.14:g.(?_ 106252945)_(106309 140_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 106,252,945 | 106,309,140 |
| nssv7474347 | Remapped | Perfect | NC_000007.14:g.(?_ 106252945)_(106309 140_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 106,252,945 | 106,309,140 |
| nssv7475206 | Remapped | Perfect | NC_000007.14:g.(?_ 106252945)_(106309 140_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 106,252,945 | 106,309,140 |
| nssv7461776 | Remapped | Perfect | NC_000007.13:g.(?_ 105893391)_(105949 586_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 105,893,391 | 105,949,586 |
| nssv7463649 | Remapped | Perfect | NC_000007.13:g.(?_ 105893391)_(105949 586_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 105,893,391 | 105,949,586 |
| nssv7464928 | Remapped | Perfect | NC_000007.13:g.(?_ 105893391)_(105949 586_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 105,893,391 | 105,949,586 |
| nssv7466227 | Remapped | Perfect | NC_000007.13:g.(?_ 105893391)_(105949 586_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 105,893,391 | 105,949,586 |
| nssv7471168 | Remapped | Perfect | NC_000007.13:g.(?_ 105893391)_(105949 586_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 105,893,391 | 105,949,586 |
| nssv7474347 | Remapped | Perfect | NC_000007.13:g.(?_ 105893391)_(105949 586_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 105,893,391 | 105,949,586 |
| nssv7475206 | Remapped | Perfect | NC_000007.13:g.(?_ 105893391)_(105949 586_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 105,893,391 | 105,949,586 |
| nssv7461776 | Submitted genomic | NC_000007.12:g.(?_ 105680627)_(105736 822_?)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 105,680,627 | 105,736,822 | ||
| nssv7463649 | Submitted genomic | NC_000007.12:g.(?_ 105680627)_(105736 822_?)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 105,680,627 | 105,736,822 | ||
| nssv7464928 | Submitted genomic | NC_000007.12:g.(?_ 105680627)_(105736 822_?)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 105,680,627 | 105,736,822 | ||
| nssv7466227 | Submitted genomic | NC_000007.12:g.(?_ 105680627)_(105736 822_?)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 105,680,627 | 105,736,822 | ||
| nssv7471168 | Submitted genomic | NC_000007.12:g.(?_ 105680627)_(105736 822_?)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 105,680,627 | 105,736,822 | ||
| nssv7474347 | Submitted genomic | NC_000007.12:g.(?_ 105680627)_(105736 822_?)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 105,680,627 | 105,736,822 | ||
| nssv7475206 | Submitted genomic | NC_000007.12:g.(?_ 105680627)_(105736 822_?)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 105,680,627 | 105,736,822 |