nsv1188027
- Organism: Homo sapiens
- Study:nstd113 (Polyak et al. 2015)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:20,178,750
- Publication(s):Polyak et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 72932 SVs from 140 studies. See in: genome view
Overlapping variant regions from other studies: 72598 SVs from 140 studies. See in: genome view
Overlapping variant regions from other studies: 21850 SVs from 42 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1188027 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 169,796,771 | 189,975,520 |
| nsv1188027 | Remapped | Good | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 170,717,922 | 190,828,225 |
| nsv1188027 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 170,954,497 | 191,133,669 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv7469805 | copy number loss | 17489 | Oligo aCGH | Probe signal intensity | nssv7459619, nssv7469193 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv7469805 | Remapped | Good | NC_000004.12:g.(?_ 169796771)_(189975 520_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 169,796,771 | 189,975,520 |
| nssv7469805 | Remapped | Good | NC_000004.11:g.(?_ 170717922)_(190828 225_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 170,717,922 | 190,828,225 |
| nssv7469805 | Submitted genomic | NC_000004.10:g.(?_ 170954497)_(191133 669_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 170,954,497 | 191,133,669 |