nsv1188015
- Organism: Homo sapiens
- Study:nstd113 (Polyak et al. 2015)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:137,862
- Publication(s):Polyak et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1285 SVs from 93 studies. See in: genome view
Overlapping variant regions from other studies: 1285 SVs from 93 studies. See in: genome view
Overlapping variant regions from other studies: 516 SVs from 28 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1188015 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000008.11 | Chr8 | 4,037,706 | 4,175,567 |
| nsv1188015 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000008.10 | Chr8 | 3,895,228 | 4,033,089 |
| nsv1188015 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000008.9 | Chr8 | 3,882,636 | 4,020,497 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv7461387 | copy number loss | 15977 | Oligo aCGH | Probe signal intensity | nssv7459162, nssv7473069 |
| nssv7463781 | copy number loss | 24713 | Oligo aCGH | Probe signal intensity | nssv7469146, nssv7463284 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv7461387 | Remapped | Perfect | NC_000008.11:g.(?_ 4037706)_(4175567_ ?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 4,037,706 | 4,175,567 |
| nssv7463781 | Remapped | Perfect | NC_000008.11:g.(?_ 4037706)_(4175567_ ?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 4,037,706 | 4,175,567 |
| nssv7461387 | Remapped | Perfect | NC_000008.10:g.(?_ 3895228)_(4033089_ ?)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 3,895,228 | 4,033,089 |
| nssv7463781 | Remapped | Perfect | NC_000008.10:g.(?_ 3895228)_(4033089_ ?)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 3,895,228 | 4,033,089 |
| nssv7461387 | Submitted genomic | NC_000008.9:g.(?_3 882636)_(4020497_? )del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 3,882,636 | 4,020,497 | ||
| nssv7463781 | Submitted genomic | NC_000008.9:g.(?_3 882636)_(4020497_? )del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 3,882,636 | 4,020,497 |