nsv1161886
- Organism: Homo sapiens
- Study:nstd111 (Lou et al. 2015)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:25
- Validation:Not tested
- Clinical Assertions: No
- Region Size:25,465
- Publication(s):Lou et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 687 SVs from 73 studies. See in: genome view
Overlapping variant regions from other studies: 690 SVs from 73 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv1161886 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 169,247,699 | 169,264,736 | 169,272,528 | 169,273,163 |
| nsv1161886 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 169,216,937 | 169,233,974 | 169,241,766 | 169,242,401 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| nssv4030043 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030044 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030045 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030046 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030047 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030049 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030050 | deletion | SNP array | Probe signal intensity | 0 |
| nssv4030051 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030052 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030053 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030054 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030055 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030056 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030057 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030058 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030060 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030061 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030062 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030063 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030064 | duplication | SNP array | Probe signal intensity | 3 |
| nssv4030065 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030066 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030067 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030068 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030069 | deletion | SNP array | Probe signal intensity | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv4030043 | Remapped | Perfect | NC_000001.11:g.(16 9247699_169264736) _(169272528_169273 163)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,699 | 169,264,736 | 169,272,528 | 169,273,163 |
| nssv4030044 | Remapped | Perfect | NC_000001.11:g.(16 9247699_169264736) _(169272528_169273 163)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,699 | 169,264,736 | 169,272,528 | 169,273,163 |
| nssv4030045 | Remapped | Perfect | NC_000001.11:g.(16 9247699_169264736) _(169272528_169273 163)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,699 | 169,264,736 | 169,272,528 | 169,273,163 |
| nssv4030046 | Remapped | Perfect | NC_000001.11:g.(16 9247699_169264736) _(169272528_169273 163)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,699 | 169,264,736 | 169,272,528 | 169,273,163 |
| nssv4030047 | Remapped | Perfect | NC_000001.11:g.(16 9247699_169264736) _(169272528_169273 163)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,699 | 169,264,736 | 169,272,528 | 169,273,163 |
| nssv4030049 | Remapped | Perfect | NC_000001.11:g.(16 9247699_169264736) _(169272528_169273 163)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,699 | 169,264,736 | 169,272,528 | 169,273,163 |
| nssv4030050 | Remapped | Perfect | NC_000001.11:g.(16 9247699_169264736) _(169272528_169273 163)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,699 | 169,264,736 | 169,272,528 | 169,273,163 |
| nssv4030051 | Remapped | Perfect | NC_000001.11:g.(16 9247699_169264736) _(169272528_169273 163)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,699 | 169,264,736 | 169,272,528 | 169,273,163 |
| nssv4030052 | Remapped | Perfect | NC_000001.11:g.(16 9247699_169264736) _(169272528_169273 163)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,699 | 169,264,736 | 169,272,528 | 169,273,163 |
| nssv4030053 | Remapped | Perfect | NC_000001.11:g.(16 9247699_169264736) _(169272528_169273 163)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,699 | 169,264,736 | 169,272,528 | 169,273,163 |
| nssv4030054 | Remapped | Perfect | NC_000001.11:g.(16 9247699_169264736) _(169272528_169273 163)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,699 | 169,264,736 | 169,272,528 | 169,273,163 |
| nssv4030055 | Remapped | Perfect | NC_000001.11:g.(16 9247699_169264736) _(169272528_169273 163)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,699 | 169,264,736 | 169,272,528 | 169,273,163 |
| nssv4030056 | Remapped | Perfect | NC_000001.11:g.(16 9247699_169264736) _(169272528_169273 163)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,699 | 169,264,736 | 169,272,528 | 169,273,163 |
| nssv4030057 | Remapped | Perfect | NC_000001.11:g.(16 9247699_169264736) _(169272528_169273 163)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,699 | 169,264,736 | 169,272,528 | 169,273,163 |
| nssv4030058 | Remapped | Perfect | NC_000001.11:g.(16 9247699_169264736) _(169272528_169273 163)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,699 | 169,264,736 | 169,272,528 | 169,273,163 |
| nssv4030060 | Remapped | Perfect | NC_000001.11:g.(16 9247699_169264736) _(169272528_169273 163)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,699 | 169,264,736 | 169,272,528 | 169,273,163 |
| nssv4030061 | Remapped | Perfect | NC_000001.11:g.(16 9247699_169264736) _(169272528_169273 163)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,699 | 169,264,736 | 169,272,528 | 169,273,163 |
| nssv4030062 | Remapped | Perfect | NC_000001.11:g.(16 9247699_169264736) _(169272528_169273 163)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,699 | 169,264,736 | 169,272,528 | 169,273,163 |
| nssv4030063 | Remapped | Perfect | NC_000001.11:g.(16 9247699_169264736) _(169272528_169273 163)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,699 | 169,264,736 | 169,272,528 | 169,273,163 |
| nssv4030064 | Remapped | Perfect | NC_000001.11:g.(16 9247699_169264736) _(169272528_169273 163)dup | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,699 | 169,264,736 | 169,272,528 | 169,273,163 |
| nssv4030065 | Remapped | Perfect | NC_000001.11:g.(16 9247699_169264736) _(169272528_169273 163)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,699 | 169,264,736 | 169,272,528 | 169,273,163 |
| nssv4030066 | Remapped | Perfect | NC_000001.11:g.(16 9247699_169264736) _(169272528_169273 163)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,699 | 169,264,736 | 169,272,528 | 169,273,163 |
| nssv4030067 | Remapped | Perfect | NC_000001.11:g.(16 9247699_169264736) _(169272528_169273 163)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,699 | 169,264,736 | 169,272,528 | 169,273,163 |
| nssv4030068 | Remapped | Perfect | NC_000001.11:g.(16 9247699_169264736) _(169272528_169273 163)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,699 | 169,264,736 | 169,272,528 | 169,273,163 |
| nssv4030069 | Remapped | Perfect | NC_000001.11:g.(16 9247699_169264736) _(169272528_169273 163)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,699 | 169,264,736 | 169,272,528 | 169,273,163 |
| nssv4030043 | Submitted genomic | NC_000001.10:g.(16 9216937_169233974) _(169241766_169242 401)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 169,216,937 | 169,233,974 | 169,241,766 | 169,242,401 | ||
| nssv4030044 | Submitted genomic | NC_000001.10:g.(16 9216937_169233974) _(169241766_169242 401)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 169,216,937 | 169,233,974 | 169,241,766 | 169,242,401 | ||
| nssv4030045 | Submitted genomic | NC_000001.10:g.(16 9216937_169233974) _(169241766_169242 401)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 169,216,937 | 169,233,974 | 169,241,766 | 169,242,401 | ||
| nssv4030046 | Submitted genomic | NC_000001.10:g.(16 9216937_169233974) _(169241766_169242 401)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 169,216,937 | 169,233,974 | 169,241,766 | 169,242,401 | ||
| nssv4030047 | Submitted genomic | NC_000001.10:g.(16 9216937_169233974) _(169241766_169242 401)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 169,216,937 | 169,233,974 | 169,241,766 | 169,242,401 | ||
| nssv4030049 | Submitted genomic | NC_000001.10:g.(16 9216937_169233974) _(169241766_169242 401)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 169,216,937 | 169,233,974 | 169,241,766 | 169,242,401 | ||
| nssv4030050 | Submitted genomic | NC_000001.10:g.(16 9216937_169233974) _(169241766_169242 401)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 169,216,937 | 169,233,974 | 169,241,766 | 169,242,401 | ||
| nssv4030051 | Submitted genomic | NC_000001.10:g.(16 9216937_169233974) _(169241766_169242 401)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 169,216,937 | 169,233,974 | 169,241,766 | 169,242,401 | ||
| nssv4030052 | Submitted genomic | NC_000001.10:g.(16 9216937_169233974) _(169241766_169242 401)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 169,216,937 | 169,233,974 | 169,241,766 | 169,242,401 | ||
| nssv4030053 | Submitted genomic | NC_000001.10:g.(16 9216937_169233974) _(169241766_169242 401)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 169,216,937 | 169,233,974 | 169,241,766 | 169,242,401 | ||
| nssv4030054 | Submitted genomic | NC_000001.10:g.(16 9216937_169233974) _(169241766_169242 401)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 169,216,937 | 169,233,974 | 169,241,766 | 169,242,401 | ||
| nssv4030055 | Submitted genomic | NC_000001.10:g.(16 9216937_169233974) _(169241766_169242 401)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 169,216,937 | 169,233,974 | 169,241,766 | 169,242,401 | ||
| nssv4030056 | Submitted genomic | NC_000001.10:g.(16 9216937_169233974) _(169241766_169242 401)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 169,216,937 | 169,233,974 | 169,241,766 | 169,242,401 | ||
| nssv4030057 | Submitted genomic | NC_000001.10:g.(16 9216937_169233974) _(169241766_169242 401)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 169,216,937 | 169,233,974 | 169,241,766 | 169,242,401 | ||
| nssv4030058 | Submitted genomic | NC_000001.10:g.(16 9216937_169233974) _(169241766_169242 401)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 169,216,937 | 169,233,974 | 169,241,766 | 169,242,401 | ||
| nssv4030060 | Submitted genomic | NC_000001.10:g.(16 9216937_169233974) _(169241766_169242 401)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 169,216,937 | 169,233,974 | 169,241,766 | 169,242,401 | ||
| nssv4030061 | Submitted genomic | NC_000001.10:g.(16 9216937_169233974) _(169241766_169242 401)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 169,216,937 | 169,233,974 | 169,241,766 | 169,242,401 | ||
| nssv4030062 | Submitted genomic | NC_000001.10:g.(16 9216937_169233974) _(169241766_169242 401)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 169,216,937 | 169,233,974 | 169,241,766 | 169,242,401 | ||
| nssv4030063 | Submitted genomic | NC_000001.10:g.(16 9216937_169233974) _(169241766_169242 401)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 169,216,937 | 169,233,974 | 169,241,766 | 169,242,401 | ||
| nssv4030064 | Submitted genomic | NC_000001.10:g.(16 9216937_169233974) _(169241766_169242 401)dup | GRCh37 (hg19) | NC_000001.10 | Chr1 | 169,216,937 | 169,233,974 | 169,241,766 | 169,242,401 | ||
| nssv4030065 | Submitted genomic | NC_000001.10:g.(16 9216937_169233974) _(169241766_169242 401)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 169,216,937 | 169,233,974 | 169,241,766 | 169,242,401 | ||
| nssv4030066 | Submitted genomic | NC_000001.10:g.(16 9216937_169233974) _(169241766_169242 401)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 169,216,937 | 169,233,974 | 169,241,766 | 169,242,401 | ||
| nssv4030067 | Submitted genomic | NC_000001.10:g.(16 9216937_169233974) _(169241766_169242 401)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 169,216,937 | 169,233,974 | 169,241,766 | 169,242,401 | ||
| nssv4030068 | Submitted genomic | NC_000001.10:g.(16 9216937_169233974) _(169241766_169242 401)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 169,216,937 | 169,233,974 | 169,241,766 | 169,242,401 | ||
| nssv4030069 | Submitted genomic | NC_000001.10:g.(16 9216937_169233974) _(169241766_169242 401)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 169,216,937 | 169,233,974 | 169,241,766 | 169,242,401 |