nsv1161343
- Organism: Homo sapiens
- Study:nstd111 (Lou et al. 2015)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:176,340
- Publication(s):Lou et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 570 SVs from 62 studies. See in: genome view
Overlapping variant regions from other studies: 570 SVs from 62 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nsv1161343 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 21,861,465 | 21,861,465 | 22,037,804 | 22,037,804 |
nsv1161343 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 21,861,696 | 21,863,899 | 22,036,867 | 22,038,033 |
Variant Call Information
Variant Call ID | Type | Method | Analysis | Copy number |
---|---|---|---|---|
nssv4034225 | deletion | SNP array | Probe signal intensity | 1 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nssv4034225 | Remapped | Good | NC_000006.12:g.(21 861465_21861465)_( 22037804_22037804) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 21,861,465 | 21,861,465 | 22,037,804 | 22,037,804 |
nssv4034225 | Submitted genomic | NC_000006.11:g.(21 861696_21863899)_( 22036867_22038033) del | GRCh37 (hg19) | NC_000006.11 | Chr6 | 21,861,696 | 21,863,899 | 22,036,867 | 22,038,033 |