nsv116
- Organism: Homo sapiens
- Study:nstd1 (Tuzun et al. 2005)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:33,661
- Publication(s):Tuzun et al. 2005
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 812 SVs from 87 studies. See in: genome view
Overlapping variant regions from other studies: 812 SVs from 87 studies. See in: genome view
Overlapping variant regions from other studies: 11 SVs from 7 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv116 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 76,588,287 | 76,621,947 |
| nsv116 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000015.9 | Chr15 | 76,880,628 | 76,914,288 |
| nsv116 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000015.8 | Chr15 | 74,667,683 | 74,701,343 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv116 | deletion | SAMN00000376 | Sequencing | Paired-end mapping | 297 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv116 | Remapped | Perfect | NC_000015.10:g.(76 588287_?)_(?_76621 947)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 76,588,287 | 76,621,947 |
| nssv116 | Remapped | Perfect | NC_000015.9:g.(768 80628_?)_(?_769142 88)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 76,880,628 | 76,914,288 |
| nssv116 | Submitted genomic | NC_000015.8:g.(746 67683_?)_(?_747013 43)del11315 | NCBI35 (hg17) | NC_000015.8 | Chr15 | 74,667,683 | 74,701,343 |