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dbVar

Database of genomic structural variation

nsv1159719

Organism: Homo sapiens

Study:nstd106 (Alsmadi et al. 2014)
Variant Type:translocation
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:1

Publication(s):Alsmadi et al. 2014

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 180 SVs from 28 studies. See in: genome view

Remapped(Score: Perfect):52,598,504-52,598,504

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop	strand
nsv1159719	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000017.11	Chr17	52,598,504	52,598,504	+
nsv1159719	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000023.11	ChrX	49,142,315	49,142,315	+
nsv1159719	Remapped	Perfect	GRCh38.p12	PATCHES	Second Pass	NW_017363818.1	Chr17\|NW_0 17363818.1	164,329	164,329	+
nsv1159719	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000017.10	Chr17	50,675,864	50,675,864	+
nsv1159719	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000023.10	ChrX	48,998,650	48,998,650	+

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv4024784	interchromosomal translocation	KWS2	Sequencing	Read depth and paired-end mapping	21,718

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop	strand
nssv4024784	Remapped	Perfect	GRCh38.p12	Second Pass	NW_017363818.1	Chr17\|NW_0 17363818.1	164,329	164,329	+
nssv4024784	Remapped	Perfect	GRCh38.p12	First Pass	NC_000017.11	Chr17	52,598,504	52,598,504	+
nssv4024784	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	49,142,315	49,142,315	+
nssv4024784	Submitted genomic		GRCh37 (hg19)		NC_000017.10	Chr17	50,675,864	50,675,864	+
nssv4024784	Submitted genomic		GRCh37 (hg19)		NC_000023.10	ChrX	48,998,650	48,998,650	+

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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