nsv1156202
- Organism: Homo sapiens
- Study:nstd97 (Lou et al. 2014)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:4
- Validation:Not tested
- Clinical Assertions: No
- Region Size:9,922
- Publication(s):Lou et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 182 SVs from 42 studies. See in: genome view
Overlapping variant regions from other studies: 182 SVs from 42 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nsv1156202 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 96,395,896 | 96,399,079 | 96,401,252 | 96,405,817 |
nsv1156202 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000004.11 | Chr4 | 97,317,047 | 97,320,230 | 97,322,403 | 97,326,968 |
Variant Call Information
Variant Call ID | Type | Method | Analysis | Copy number |
---|---|---|---|---|
nssv4014726 | deletion | SNP array | SNP genotyping analysis | 1 |
nssv4014727 | duplication | SNP array | SNP genotyping analysis | 3 |
nssv4014728 | deletion | SNP array | SNP genotyping analysis | 1 |
nssv4014729 | deletion | SNP array | SNP genotyping analysis | 1 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nssv4014726 | Remapped | Perfect | NC_000004.12:g.(96 395896_96399079)_( 96401252_96405817) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 96,395,896 | 96,399,079 | 96,401,252 | 96,405,817 |
nssv4014727 | Remapped | Perfect | NC_000004.12:g.(96 395896_96399079)_( 96401252_96405817) dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 96,395,896 | 96,399,079 | 96,401,252 | 96,405,817 |
nssv4014728 | Remapped | Perfect | NC_000004.12:g.(96 395896_96399079)_( 96401252_96405817) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 96,395,896 | 96,399,079 | 96,401,252 | 96,405,817 |
nssv4014729 | Remapped | Perfect | NC_000004.12:g.(96 395896_96399079)_( 96401252_96405817) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 96,395,896 | 96,399,079 | 96,401,252 | 96,405,817 |
nssv4014726 | Submitted genomic | NC_000004.11:g.(97 317047_97320230)_( 97322403_97326968) del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 97,317,047 | 97,320,230 | 97,322,403 | 97,326,968 | ||
nssv4014727 | Submitted genomic | NC_000004.11:g.(97 317047_97320230)_( 97322403_97326968) dup | GRCh37 (hg19) | NC_000004.11 | Chr4 | 97,317,047 | 97,320,230 | 97,322,403 | 97,326,968 | ||
nssv4014728 | Submitted genomic | NC_000004.11:g.(97 317047_97320230)_( 97322403_97326968) del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 97,317,047 | 97,320,230 | 97,322,403 | 97,326,968 | ||
nssv4014729 | Submitted genomic | NC_000004.11:g.(97 317047_97320230)_( 97322403_97326968) del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 97,317,047 | 97,320,230 | 97,322,403 | 97,326,968 |